Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq230 185 2e-41 seq51 102 2e-16 seq175 89.7 1e-12 seq17 89.7 1e-12 seq152 86.0 1e-11 >seq230 Length=51241 Score = 185 bits (204), Expect = 2e-41 Identities = 559/851 (66%), Gaps = 32/851 (4%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAA---TGGCGAGATCATT 110363 |||||||||||||| | |||||| | ||| | | |||| |||| | || ||| || Sbjct 29833 TTTGGTTTCAAAACATTAGAACGTTCATATCTTCATCGTATCAACAATAGC---ATCGTT 29777 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||||||| | | |||||| | || ||||||||||| | ||||| | Sbjct 29776 GAACGTCCACAACACATGCTAATGCGTGTTTCTATCGGTATTCATGGTAACGATATCGAC 29717 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 || ||| || || ||||||| |||| || ||||| || || || Sbjct 29716 AATGCAATTCTTACCTACGAGAAATTAAGTCAAAAACTCTTTACACATGCCACACCAACT 29657 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 || || || || || || |||| || | || |||||| | | ||| || Sbjct 29656 CTTTTCAATGCTGGTACACCATACCCACAAATGTCCTCATGCTTTTTAGTTCAAATGAAA 29597 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 || ||||| || || |||||||||||| | || ||| || |||| | ||||| |||| | Sbjct 29596 GAGGATTCAATCGATGGTATTTATGATACCCTCAAACAATGTGCTTTAATTTC-AAAATC 29538 Query 110604 T-CTGGAGGAATTGGTATTCACGTTCATGATATTCG-----CTCAAAAGGAGCAAATATC 110657 | | || || || |||||| ||| | ||||| |||||| | || || Sbjct 29537 TGCAGGTGGTATAGGTATTGCTTGCCATAAGATTCGTGCCGCTCAAAGTTAT---AT-TC 29482 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 | | | | || | || ||| | || |||||| | | || ||||| || ||| Sbjct 29481 GTGGTACCAATGGCACCAGTAA-TGGTTTGGTACCAATGCTCCGTGTTTTCAATGATACT 29423 Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || ||||| ||||||||||| || ||||| || | ||||| | ||||||||| Sbjct 29422 GCTCGTTATGTAGATCAAGGTGGTGGTAAAAGAAAAGGTGCCTTTGCAGTATATCTCGAA 29363 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 || ||||| |||||||| |||||||| | ||||| || ||||| || |||||| Sbjct 29362 CCATGGCACTCAGATATTTTTGAATTTATTGAACTCAAAAAGAATCATGGTAAGGAAGAA 29303 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 ||||| | ||| | ||||| || | ||| | ||| | |||||| || | || Sbjct 29302 ATGAGAGCCAGAGATCTCTTTTACGCTCTTTGGGTCAGCGATCTTTTCATGGAAAGAGTA 29243 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 || |||| || ||||| || | |||||| | | || |||| ||| | | Sbjct 29242 GAACAAAACGGAGATTGGTCACTCTTTTGTCCTAACGAAGCCCCACGTCT---TGACGAA 29186 Query 110955 ---TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGC 111011 | | |||| | || ||||| ||||||| |||| | || | | || Sbjct 29185 ACTCACTCAGAAGAACATCGTGAACTTTATCTCAAATATG-AAAATACACCAGGCCTTGC 29127 Query 111012 -AAAC---AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAAC 111067 | || |||| |||||||||||||||||| |||| | || || ||||||||||| Sbjct 29126 TAGACGTGTAATTAAAGCTCAAGAACTTTGGTTTGCAATCATGGAGTCTCAAGTTGAAAC 29067 Query 111068 TGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTT 111127 ||| || || | |||| | ||||||||| | |||| ||||| ||||||| |||| | Sbjct 29066 TGGTACACCATTTATTCTCTATAAAGATTCTTGTAATTCTAAATCCAATCAAAAGAATCT 29007 Query 111128 AGGAACAATTA 111138 || || |||| Sbjct 29006 TGGTACTATTA 28996 Score = 104 bits (114), Expect = 6e-17 Identities = 291/437 (67%), Gaps = 15/437 (3%) Strand=Plus/Minus Query 113016 GCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCA 113075 ||||||||||| || || || ||| |||| ||| | ||||| || ||||| || || ||| Sbjct 28441 GCACCAATGCCAACTGCATCAACTTCACAAATTTTAGGTAACAACGAATGCTTTGAACCA 28382 Query 113076 ATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACT-TTGT-AATA 113133 ||| ||||| ||||| || |||||| |||| ||||| || |||| |||| |||| Sbjct 28381 TATACCAGTAACATTTACAGTCGTCGTGTTTTAGCTGGTGAATT--TACTATTGTCAATA 28324 Query 113134 AATATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACTCCA 113193 || | || | ||||| | || ||| | | || | | || | | ||| | || | Sbjct 28323 AACAACTTCTCGAAGATC-TCATGGAGTTAGGAATTTGGTCACCAGAATTAAAGAATCAA 28265 Query 113194 TTATTGCT-AATCAAGGTTCGGTTCAACATCTAAAAT---TGCCTGATTGCGTGAAAGAT 113249 | | || || | ||||| ||||| | | || | || ||| | ||||| Sbjct 28264 ATCGTTCTCAACCGTGGTTCAATTCAAAGTATCCCATCCATTCCAGATGATCTTAAAGAA 28205 Query 113250 GTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGT 113309 | | || || |||||||||||| ||| | |||||||||||||||| |||||| Sbjct 28204 CTTTACAAAACAGTTTGGGAAATTAGACAAAGAACATTAATTGATATGGCTGCTGATCGT 28145 Query 113310 GGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACACCTCACCAGAT 113369 || ||||| |||||| ||| | || | ||||| | || | | | | Sbjct 28144 GGTGCTTTTATTGATCAAAGTCAAAGTTTCAATGTTTTTATTGCTGAACCAACTTTTGCT 28085 Query 113370 AAGGTGACATC--TGCTCTATTT-TACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTAT 113426 || | ||||| ||| |||| ||| |||||||||||| | ||||| |||||||| Sbjct 28084 AAACTTACATCAATGC---ATTTCTACTCTTGGAAAAAAGGTCTCAAAACTGGTATGTAC 28028 Query 113427 TATTTGCGAACACGTCC 113443 ||| | || || ||||| Sbjct 28027 TATCTCCGTACTCGTCC 28011 >seq51 Length=115666 Score = 102 bits (112), Expect = 2e-16 Identities = 401/616 (65%), Gaps = 36/616 (6%) Strand=Plus/Minus Query 304885 TTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATC 304944 |||||||| ||| |||| |||| | ||||| |||||| | || | || || Sbjct 81590 TTTACAATTTCACGTTGCTACATATGTTGATAACGAAATTCCAGGTCTCCCACAAGCTCA 81531 Query 304945 TCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCG 305004 ||| | ||||| ||||| ||||| ||| | ||||| | || ||||| || ||| | Sbjct 81530 ACAACGTTCTGGTAGACCATTAAAATCAATTCGTCAACGTTTAAAGGGTAAGGAAGGTAG 81471 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 ||| |||||||||| ||||| |||||||||||||| |||| | | ||||| || | Sbjct 81470 AATTAGAGGTAATCTTATGGGTAAACGTGTTGATTTCTCTGCACGTACAGTAATTACTGC 81411 Query 305065 TGATTCTCAAATTAGTC--TTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTA 305122 ||| ||||| || || || || |||| |||||| | |||||| | || || Sbjct 81410 CGAT--CCAAATCTTTCAATTGATCAAGTAGGTGTTCCACGTTCAATTGCACTCAATCTT 81353 Query 305123 ACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCTTAA 305181 || | |||||| | |||| || | |||||| | | ||||| | ||| ||| Sbjct 81352 ACTTATCCAGAAACTGTTACACCA-TTCAATATTGACAAGATGAGAGAGTTAATTCGTAA 81294 Query 305182 TGG---AAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAGAAGAC 305238 ||| |||| | |||||||||| | |||| | | | |||| | Sbjct 81293 TGGTCCAAAT---GAACATCCAGGTGC-----CAAATATATTATCCGTG---AAGATGGA 81245 Query 305239 AATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAATGC---TTGAAATTAATGA 305295 | | || || | | |||||| || | ||| | | | | || | | | Sbjct 81244 ACTCGTTTCGATTTACGTTTTGTTAAAA-AAGTTAGTGATACACATTTAGAGTGTGGTTA 81186 Query 305296 TATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACT 305355 || || ||||| | || || |||| ||| | |||||| | |||||||| || Sbjct 81185 TAAAGTCGAAAGACACATTAACGATGGTGATGTAGTTATTTTCAATCGTCAACCATCTCT 81126 Query 305356 GCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGA 305413 ||||||||||||||||||| |||| |||| | |||| | ||| || ||||| Sbjct 81125 TCATAAAATGTCTATGATGGGTCATCGTATCAAGG--TTATGCCATATTCAACTTTTCGT 81068 Query 305414 TTAAATGTAAGTGCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAA 305469 |||||| | | | |||| | || |||||||| ||||||||||| ||||||||||| Sbjct 81067 TTAAATCT---TTC-TGTAACATCACCATATAATGCAGATTTTGATGGTGATGAAATGAA 81012 Query 305470 TATGCATGTACCTCAA 305485 | | || || || ||| Sbjct 81011 TCTTCACGTTCCACAA 80996 >seq175 Length=63307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 11/184 (6%) Strand=Plus/Plus Query 167176 TCATTTTTGATTATCTTTTTTATCGAAATATTTCAAAA--------GAGCACCTAAAATC 167227 |||||| | ||| | |||||||||| | ||| |||| |||||| | ||| Sbjct 3974 TCATTTGTTATTTT-TTTTTTATCGGCAGGTTTTAAAATTTGGAATGAGCACATTAAAGT 4032 Query 167228 TTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTG 167286 || || | ||| | | ||||||||||||| || || | | | |||||||| || | Sbjct 4033 TTCATCGACACCCATCATAGCACCAGCATTATCAAACTC-TCCAAAGTAATTTGGAGCAG 4091 Query 167287 AAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCAT 167346 | || | || || |||| ||| ||| ||| ||||||||||||||||||||||||| || Sbjct 4092 AGAAAAGTGTGACCAATTGACGCTTGGCAAAGAATTCATAACCATCTTCAACAACTTGAT 4151 Query 167347 GGGC 167350 |||| Sbjct 4152 GGGC 4155 >seq17 Length=153674 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| ||||| |||||| | || || ||| | || |||| || ||| | Sbjct 140501 TTCAATCGTCAACCTTCACTTCATAAACTTTCAATTATGTCCCACAAAGCCAGAGTTATG 140560 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | |||| || || || || || | ||| ||||| || || ||||| ||||| || Sbjct 140561 CCATGGAGA-ACTTTACGTTTCAACGAGTGTGTATGTACACCATACAATGCAGATTTCGA 140619 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| |||||||||||||| ||| |||||||| Sbjct 140620 TGGTGATGAAATGAATATCCATTTACCTCAA 140650 >seq152 Length=67104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 ||| ||||| | |||||| |||| || |||| | ||| | | | || ||||| Sbjct 54754 AGACTTTATCAACAAAGAATTGATTTTATTCTCTATTGCCGATTGTGAAAGATCAATTCC 54813 Query 279865 T-CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTAT--ATTCAGTTGTTTCAA 279921 | || || || ||||||| ||| | || || | || ||| | ||||| || ||||| Sbjct 54814 TTCAATTGTTG-ATGGTTTAAAAACCTCTCAAAGAAAAATTCTTTATTCA--TGCTTCAA 54870 Query 279922 AAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGC 279981 |||||| || ||| |||||| |||||||| ||| ||||||||||| ||||| | Sbjct 54871 AAGAAATTTAAAAAAAGAAATTAAAGTTGCTCAATTAATTGGTTATGTTTCCGAACACTC 54930 Query 279982 AGGTTATCATCACGGTGAA 280000 | ||||||||| |||||| Sbjct 54931 TGCTTATCATCATGGTGAA 54949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800650374839