Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq246 118 3e-21 seq242 111 4e-19 seq86 95.1 3e-14 seq20 93.3 1e-13 >seq246 Length=49296 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| || || || ||| ||||||| || | ||| Sbjct 11252 AAAACCCTTACTGGCAAAACCATCACCTTAGAGGTCGAAGGTTCTGATACTATTGAAAAT 11193 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| || || || |||||||||||||| Sbjct 11192 GTAAAAGCTAAA-ATCCAAGATAAAGAAGGTATCCCACCAGATCAACAAAGACTTATCTT 11134 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||| | |||| ||||| | || ||||| || Sbjct 11133 TGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCCGACTACAATATTCAAAAAGAATC 11074 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || | ||||| |||||||| Sbjct 11073 TACCCTCCATTTAGTTTTAAGACTTCG 11047 >seq242 Length=49570 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || ||||| ||||| ||| | ||||| || | ||| Sbjct 4730 AAAACTCTTACTGGCAAGACCATTACTTTAGAAGTAGAAGGCTCTGATACCATTGAAAAT 4671 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| |||||||||||| || || ||||||||||| || Sbjct 4670 GTAAAGACCAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTT 4611 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || |||||||| | ||| | | || |||||| |||| ||||| || Sbjct 4610 GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATCCAAAAAGAATCA 4551 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || || ||||| || Sbjct 4550 ACTCTCCATTTAGTATTAAGACTCCG 4525 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || ||||| || ||||| ||||| ||| | || || ||| | ||| Sbjct 4047 CAAAACTTTAACCGGTAAAACTATTACTTTAGAAGTTGAAGGCTCAGATACAATTGAAAA 3988 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||||||||| |||||||| || || || ||| | | || || Sbjct 3987 TGTAAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTAATTTT 3928 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | ||| | | || || || |||| ||||| || Sbjct 3927 TGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTATAATATCCAAAAAGAATC 3868 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || || |||||||| Sbjct 3867 AACTCTCCATTTAGTATTAAGACTTCG 3841 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||||| ||||| ||| | || || || | ||| Sbjct 3818 AAAACTTTAACCGGTAAAACCATTACTTTAGAAGTTGAAGGCTCAGATACTATTGAAAAC 3759 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| | ||| |||||||| |||||||| || || || ||||||||||| || Sbjct 3758 GTTAAAACTAAA-ATTCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGACTTATTTT 3700 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | ||| | | || |||||| | || ||||| || Sbjct 3699 TGCAGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAACATTCAAAAAGAATC 3640 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||| || | ||| | ||| Sbjct 3639 AACTCTCCATTTAGTTCTTAGA 3618 >seq86 Length=87693 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || ||||| ||||| | ||||| ||| | || || || ||||| Sbjct 63082 CAAAACCCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGGCTCAGATACCATCGAAAA 63141 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || || ||||||||||| |||||||| || || || ||| | || || || Sbjct 63142 CGTCAAAACCAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAACAACGTCTCATTTT 63201 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||| | | || |||||| | || ||||| || Sbjct 63202 TGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCAAAAAGAATC 63261 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | ||||| ||||| || Sbjct 63262 AACTCTCCATTTAGTTTTAAGACTCCG 63288 >seq20 Length=149080 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 ||| ||||| |||||| | ||||| ||| |||| || || ||||| || ||| || Sbjct 74686 AGGTAAAACCATCACTCTCGAAGTTGAAGGTTCAGATACCATCGAAAACGTCAAGGCTAA 74627 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 || ||||| |||||||| || || ||| ||| | | ||||||||||| || || Sbjct 74626 AATCCAAGACAAAGAAGGTATCCCACCTGACCAACAACGTTTAATCTTCGCCGGTAAACA 74567 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 || |||||||| | || || |||||||| | || ||||| || || || ||| | Sbjct 74566 ATTAGAAGATGGTCGTACCTTACAAGATTACAATATTCAAAAAGAATCAACCCTCCACTT 74507 Query 206376 TGTTTTGAGACTTCGA 206391 || || |||||| || Sbjct 74506 AGTCTTAAGACTTAGA 74491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181808701478879