Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq230 181 1e-40 seq213 91.5 2e-13 seq317 89.7 6e-13 seq8 89.7 6e-13 >seq230 Length=51241 Score = 181 bits (200), Expect = 1e-40 Identities = 561/854 (66%), Gaps = 27/854 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || || ||||| |||| |||||| | ||| | |||||| || | Sbjct 28020 CGGAGATAGTACATACCAGTTTTGAGACCTTTTTTCCAAGAGTAGAAATGCATTGATGTA 28079 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || || | | ||||| | || || | || | |||||||||||| ||||| || Sbjct 28080 AGTTTAGCAAAAGTTGGTTCAGCAATAAAAACATTGAAACTTTGACTTTGATCAATAAAA 28139 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCG 110541 || || | || ||||||||||| | | ||| ||| ||||||||||||||| Sbjct 28140 GCACCACGATCAGCAGCCATATCAATTAATGTTCTTTGTCT-AATTTCCCAAACTGTTTT 28198 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 || || | || | ||||||||| || || |||| | || || ||||| | Sbjct 28199 GTAAAGTTCTTTAAGATCATCTGGAATGGATGGGATACTTTGAATTGAACCACGGTTGAG 28258 Query 110602 CACCATGAGATCCTTCATATCCTTG-GACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 || || ||| ||| | || || | ||||| | || | || | |||| || | || | Sbjct 28259 AACGATTTGATTCTTTA-ATTCTGGTGACCAAATTCCTAACTCCATGAGATCTTCGAGAA 28317 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 | || || |||||||| ||| ||||| || | | | ||| ||||| | | Sbjct 28318 GTTGTTTATTGACAATAGTAAATTCACCAGCTAAAACACGACGACTGTAAATGTTACTGG 28377 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 | ||||||||||||||||| || ||||| || ||||||| || || || |||||||||| Sbjct 28378 TATATGGTTCAAAGCATTCGTTGTTACCTAAAATTTGTGAAGTTGATGCAGTTGGCATTG 28437 Query 110781 GTGCCATCAAAAGACTGTTACGAAG---ACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 |||| || ||||| ||||||||| ||| || | || || |||||| || Sbjct 28438 GTGCTATTAAAAGTGAGTTACGAAGACCACCTTTATTAACAATTTTATCTTTGAGATCAG 28497 Query 110838 CCCAGT-----CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCC 110892 ||||| || | ||| ||||| | || || ||| | || | || || | || Sbjct 28498 TCCAGTTCCAACG-ATTTG---TTGGTGTAACATT-CCAGAAATCGTATTGGAGAATACC 28552 Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA 110952 |||| || || ||||| | ||| |||||||| | ||||| || || || Sbjct 28553 TTGGCTGGCTGGTGAACCTTTAAATGTTTCATATGGACCTTCAATAAGAGATAACTCGTG 28612 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTC-AAAGATACGAGCATTCATCTCCTTGG 111011 || |||| || ||| || ||||| | | | | || || || | Sbjct 28613 TGATGCTGTAAGGGCAGCAAAATAAATAGTTTCTGCAATTTCAATGTTTAAT----TTTG 28668 Query 111012 CTTCATCTG---AATCAAAT-GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGA 111067 | || | | ||||||| || || || ||| || ||||| || ||||||||| Sbjct 28669 CGGCAGCGGTACCATCAAATGGCATA-CGAAGTTGAATGAAAACATCAGCAAGACCTTGA 28727 Query 111068 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAA 111127 | ||| | |||||| || | |||| | |||||| || || | ||| ||||| Sbjct 28728 ATACCAATACCAATTGGACGATGTCTTAAATTAGAGGTTTTGGCTTCTTGAACTGGATAG 28787 Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGT 111187 | || | ||||| | | ||| ||||| ||||||||||| || |||||||||| |||| Sbjct 28788 TAGTTACGATCAATAATTTTGTTAAGATTCTTGGTAACAATTTTAGTGATTTCATAAAGT 28847 Query 111188 TTTTCATAATCAAA 111201 |||| || |||||| Sbjct 28848 TTTTGATGATCAAA 28861 Score = 111 bits (122), Expect = 2e-19 Identities = 317/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 111509 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTC 111568 |||| ||| || | || ||||| || || ||||| | || || || || | | | Sbjct 29193 AGACGTGGGGCTTCGTTAGGACAAAAGAGTGACCAATCTCCGTTTTGTTCTACTCTTTCC 29252 Query 111569 ATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCA 111628 |||||||| || | ||| || | ||||||||||||| | ||||| | | Sbjct 29253 ATGAAAAGATCGCTGACCCAAAGAGCGTAAAAGAGATCTCTGGCTCTCATTTCTTCCTTA 29312 Query 111629 CCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG 111688 || || || | | |||| || || | ||||| | ||||||||| || ||||| Sbjct 29313 CCATGATTCTTTTTGAGTTCAATAAATTCAAAAATATCTGAGTGCCATGGTTCGAGATAT 29372 Query 111689 ACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745 ||||| | | || |||| || ||| |||||| |||||| || || || | || Sbjct 29373 ACTGCAAAGGCACCTTTTCTTTTACCACCACCTTGATCTACATAACGAGCAGTATCATTG 29432 Query 111746 AATACGCGAAGCATTGGAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAG 111803 || || || |||||||| | | ||||| ||| | ||||| || || |||||| | Sbjct 29433 AAAACACGGAGCATTGGTACCAAACCATTACTGGTG--CCATTGGTACCACGAATATAAC 29490 Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 111863 || | ||| | | | |||| || || ||||| || || | ||||| ||| Sbjct 29491 TTTGAGCGGCACGAATCTTATGGCAAGCAATACCTATACCACCTGCAGATTTTGAAATTA 29550 Query 111864 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG-TTGGCGATA 111922 ||||| | | || || |||| ||||| | |||||| ||||| || || | || Sbjct 29551 AAGCACATTGTTTGAGGGTATCATAAATACCATCGATTGAATCCTCTTTCATTTGAACTA 29610 Query 111923 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 111982 | ||||| |||||| || || |||||||||||||||||| || |||||||| || Sbjct 29611 AA-AAGCATGAGGACATTTGTGGGTATGGTGTACCAGCATTGAAAAGAGTTGGTGTGGCA 29669 Query 111983 TG 111984 || Sbjct 29670 TG 29671 >seq213 Length=53756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/273 (68%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||| ||||| || || || | ||| ||||| ||| || ||||||||| | ||| Sbjct 48342 TGAAGACCTTCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCT 48283 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 | |||||| ||||| ||||| || || || ||| ||||||||||| || Sbjct 48282 CTCTTCTTTAACCAGAAAATACTACAAAAACTACCACTGAAAAAGATACCCTCTACTGCG 48223 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| |||| | ||||| || || || ||| | || || |||||| | |||| Sbjct 48222 GCAAATGCAACCAAACGTTCTGCAAA--AGAATCACTAT-TATTAATCCATTTTAATGCC 48166 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATA-ACTGCTTCTT 122909 || | || ||||| | ||||||||| | || | || || | ||||| | ||| || Sbjct 48165 CAATCAGCTTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTT 48106 Query 122910 TTCAGATCCATCCTTAATGTATTTGTCAATCAA 122942 | | || ||| ||||| ||| | ||||| || Sbjct 48105 TGCTCAT-TATCTTTAATATATGTATCAATTAA 48074 >seq317 Length=37906 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||||||||| |||||||||||| ||| | | || | || || | | Sbjct 22791 GCATCAATTTCATCAATGAAAACAATACATGGTGCATTCTTTCTAGCTAAATCGAATAAA 22732 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || | ||| ||| | ||| |||||||||||||| || || || | || | ||| Sbjct 22731 TCTCTAACTCTTGATGGACCAACACCAACAAACATTTCAACGAAATCTGAACCTGAGGTT 22672 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | |||||| ||||||| |||||| || | ||| ||| | | || || || ||| Sbjct 22671 GAAAAGAATGGTACATTTGCTTCACCAGCAGTTGCTTTGGCAATTAAAGTTTTACCAGTA 22612 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| ||| | |||| || |||| || || || || || Sbjct 22611 CCTGGTGGACCAACAAGAATTGCACCTCTTGGAATTTTAGCGCC 22568 >seq8 Length=179212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 9432 GGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGG 9491 ||||| || ||||| | | |||||||||||||| || || ||||| ||||| |||||| Sbjct 147862 GGTAATATTAACGCTAAACGTGATTGGGGTCACGCCAAAGATTATGTCGAAGCCATGTGG 147921 Query 9492 CTCATGCTTCAACAAGAGGAAGCC-GACGAATATGTAGTAGCAACGGGTGAGACCCATTC 9550 | ||| | |||||||| ||||| | || | ||| | ||||| ||||| |||||||| Sbjct 147922 TTGATGTTACAACAAGA-TAAGCCACAAGATTTTGTTATTGCAACCGGTGAAACCCATTC 147980 Query 9551 AGT 9553 ||| Sbjct 147981 AGT 147983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025727530400