Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq230 143 3e-29 seq213 91.5 2e-13 seq317 84.2 3e-11 >seq230 Length=51241 Score = 143 bits (158), Expect = 3e-29 Identities = 553/855 (65%), Gaps = 29/855 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || || ||||| || | ||||| | || | ||||||||| | Sbjct 28020 CGGAGATAGTACATACCAGTTTTGAGACCTTTTTTCCAAGAGTAGAAATGCATTGATGTA 28079 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | || | | ||||| | || || | || | |||||| |||||| || || Sbjct 28080 AGTTTAGCAAAAGTTGGTTCAGCAATAAAAACATTGAAACTTTGACTTTGATCAATAAAA 28139 Query 117957 CGTCCCCGATCCGCCGCCATATCAA-TCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 || ||||| || |||||||||| | | | ||| || | |||||||| || || | Sbjct 28140 GCACCACGATCAGCAGCCATATCAATTAATGTTCTTTGTC-TAATTTCCCAAACTGTTTT 28198 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| || | |||| ||||||||| || |||| |||| || || |||| || Sbjct 28199 GTAAAGTTCTTTAAGATCATCTGGAATGGATGGGATACTTTGAATTGAACCAC---GGTT 28255 Query 118076 G---ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 | || || ||| ||| | || |||||| | || | || ||||||| || | Sbjct 28256 GAGAACGATTTGATTCTTTAATTCTGGTGACCAAATTCCTAACTCCATGAGATCTTCGAG 28315 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 || || |||||||||| | ||| ||||| || | || | || || || | Sbjct 28316 AAGTTGTTTATTGACAATAGTAAATTCACCAGCTAAAACACGACGACTGTAAATGTTACT 28375 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 || ||||| |||||||| || |||||||| || ||||| | || || || || ||||| Sbjct 28376 GGTATATGGTTCAAAGCATTCGTTGTTACCTAAAATTTGTGAAGTTGATGCAGTTGGCAT 28435 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGAC--CCTTT-TCCCTAATGCGTTCCTTGAGAGC 118309 ||||| || | ||| |||||| |||| ||||| | ||| || |||||| | Sbjct 28436 TGGTGCTATTAAAAGTGAGTTACGAAGACCACCTTTATTAACAATTTTATCTTTGAGATC 28495 Query 118310 GTCCCAGT-----CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATA 118364 ||||| || | ||| || || | | | ||| | ||| | ||||| ||| Sbjct 28496 AGTCCAGTTCCAACG-ATTTG---TTGGTGT-AACATTCCAGAAATCGTATTGGAGAATA 28550 Query 118365 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 118424 |||||| ||||| || || | |||||| |||||||| || |||| | || ||| Sbjct 28551 CCTTGGCTGGCTGGTGAACCTTTAAATGTTTCATATGGACCTTCAATAAGAGATAACTCG 28610 Query 118425 -GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA---TTGC 118480 | | | || ||||| || ||| || ||||| ||| | || | |||| Sbjct 28611 TGTGAT-GCTGTAAGGGCAGCAAAATAAATAGTTTCTGCAATTTCAATGTTTAATTTTGC 28669 Query 118481 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 118540 ||| || |||||| | | || ||| || ||||| || |||||||| Sbjct 28670 ---GGCAGCGGTACCATCAAATGGCATACGAAGTTGAATGAAAACATCAGCAAGACCTTG 28726 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATA 118600 | ||| | |||||||| |||||||| | |||||| | || | || ||||| Sbjct 28727 AATACCAATACCAATTGGACGATGTCTTAAATTAGAGGTTTTGGCTTCTTGAACTGGATA 28786 Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660 | || | ||| |||| | || ||||| ||||| |||| || |||||||||| ||| Sbjct 28787 GTAGTTACGATCAATAATTTTGTTAAGATTCTTGGTAACAATTTTAGTGATTTCATAAAG 28846 Query 118661 CTTTTCGTAATCAAA 118675 |||| | |||||| Sbjct 28847 TTTTTGATGATCAAA 28861 >seq213 Length=53756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||| || ||||| ||||| | ||| || || ||| | ||||||||| | ||| Sbjct 48342 TGAAGACCTTCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCT 48283 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 | |||||| ||||||||||| |||||| ||| ||| ||||| ||||| || Sbjct 48282 CTCTTCTTTAACCAGAAAATACTACAAAAACTACCACTGAAAAAGATACCCTCTACTGCG 48223 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || |||| | ||| || ||||| || ||| | ||| || ||| || | ||| Sbjct 48222 GCAAATGCAACCAAACGTTCTGCAAA--AGAATCACTAT-TATTAATCCATTTTAATGCC 48166 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG-TTCCTTCTT 130266 || | || || || | ||||| || | ||| | || || | ||| || || ||| || Sbjct 48165 CAATCAGCTTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTT 48106 Query 130267 TTCTGATGGATCTTTGATGTACTTATCTAT 130296 | || || |||||| || || |||| || Sbjct 48105 TGCTCAT-TATCTTTAATATATGTATCAAT 48077 >seq317 Length=37906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/201 (71%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCA 14209 ||| |||||||| ||| || | |||||| | || | ||| ||||| ||||| ||| Sbjct 22885 AAAACCATCCATTTCAACTAACAATTGATTAAGAGTATTTTCACGTTCGTCATTACCGCC 22826 Query 14210 GGCATA-CCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 | | ||||| || | ||||| |||| | ||| ||||||||||| |||||||| | Sbjct 22825 TGAGAAGCCACCTTGACCTC-TTGCTCTACCAATGGCATCAATTTCATCAATGAAAACAA 22767 Query 14268 TACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 |||||||| ||| | | || | || || | ||||| ||||| | ||| |||| Sbjct 22766 TACATGGTGCATTCTTTCTAGCTAAATCGAATAAATCTCTAACTCTTGATGGACCAACAC 22707 Query 14328 CCACAAACATCTCCACAAAAT 14348 | |||||||| || || |||| Sbjct 22706 CAACAAACATTTCAACGAAAT 22686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429023378440