Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 9e-14 >seq1 Length=19924566 Score = 93.3 bits (102), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 118909 ATGGGTTATTTTTGACGAAGTTCATTATATCAATGATAA--ATCCAGGGGTTCTGTATGG 118966 ||||||||| ||||| |||||||||||||| | ||||| | | ||| || ||| ||| Sbjct 6253324 ATGGGTTATATTTGATGAAGTTCATTATATGAGAGATAAAGAACGAGGAGT--TGTTTGG 6253267 Query 118967 GAAGAGTCAATCATTTTGATGCCGGATACGATGCGCGCTGtttttttGTCTGCAACGGTT 119026 ||||| ||||| ||||| | || ||||| | | ||| ||||| |||||||| | Sbjct 6253266 GAAGAATCAATTATTTTATTACCAGATACTGTACATTATGTATTTTTATCTGCAACAATA 6253207 Query 119027 CCGAACGCGGTTGAATTTTCAAATTGG 119053 || || || |||||||| ||| |||| Sbjct 6253206 CCAAATGCATTTGAATTTGCAAGTTGG 6253180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823986446630