Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=19924566 Score = 107 bits (118), Expect = 2e-18 Identities = 347/523 (66%), Gaps = 28/523 (5%) Strand=Plus/Minus Query 71548 TATTCAGTTGATAATTGGCCCCATGTTTTCAGGTAAAAGTACAGAATTAATTAGACGAGT 71607 |||||| || || ||||| || |||||| ||||||| ||| |||||||| |||| | Sbjct 4694837 TATTCAATTAATTATTGGTCCTATGTTTAGTGGTAAAACTACTGAATTAATAAGACTTAT 4694778 Query 71608 TAGACGTTATCAAATAGCTCAATATAAATGC-GTGACTATAAAATATTCTAACGATAATA 71666 || | | | | | ||| ||| | || | | || ||| ||||| ||||| |||| || Sbjct 4694777 TAAAAGGTTT-AGATATTCCAAAAAAACTACTGTTGTTATTAAATACTCTAAGGATACTA 4694719 Query 71667 GATACGGAACGGGACTATGGA-------CGCATGATAA-GAATAATTTTGAAGC-ATTGG 71717 | || ||| ||| | ||| | | |||||||| |||| || |||| ||| Sbjct 4694718 GGTATGGATCGGAAG-ATGAAGCTATTTCTCATGATAAAGAATCATGGA-AAGCTATTCC 4694661 Query 71718 AAGCAACTAAACTATGCGATGTCTTGGAA--GCAATTACAGATTTCTCCGTGATAGGTAT 71775 || || || |||| | |||| || || ||| ||| || || ||||| Sbjct 4694660 AACCATGAAATTAATGCCAGTACTTGAAACCGCTCTTA---ATTATGAAGTTATTGGTAT 4694604 Query 71776 TGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG-GCAAACGAAG 71834 ||||||||| |||||||| |||||| | | || || | ||| | ||| |||| | | Sbjct 4694603 TGATGAAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAG-GCATGTGCAAGTTATG 4694545 Query 71835 GAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCGTTT--AATAA 71892 ||| | | || || |||| ||| | ||||| ||||| ||| | ||||| ||| | || Sbjct 4694544 GAAGATTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAAAACCATTTGGACAAA 4694485 Query 71893 TATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAA 71952 | || |||||||||||||||| ||||| || ||| ||| ||| || ||| | || Sbjct 4694484 TTACT--GATCTTATTCCATTATGTGAAAGCGTAAAAAAGTTAAGTGCTGTTTGTGTTAA 4694427 Query 71953 ATGCTTTAAGGAGGCGTCCTTTTCTAAACGATTAGGTACAGA--AACCAAGATAGAAATA 72010 || ||| | || | ||||| | || || |||| || || || ||| | Sbjct 4694426 TTGTGGTAAAAAAGCAGCTTTTTCATTAAGAACCAGTTCAGAAGAATCA--ATTGAAGTT 4694369 Query 72011 ATAGGAGGAATTGATATGTATCAATCGGTGTGTAGAAAGTGTT 72053 || |||||| | |||| ||| | || |||||||| |||| Sbjct 4694368 ATTGGAGGAGTAGATAAATATTGTGCTGTCTGTAGAAAATGTT 4694326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721592578480