Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 >seq1 Length=19924566 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||||||||||| ||||| || |||||| | ||| Sbjct 3528451 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 3528392 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || |||||| | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 3528391 GAAGGAAAAACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 3528332 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 3528331 AGATTAAGAGGAGGATA 3528315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||||||||||| ||||| || |||||| | ||| Sbjct 12568264 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 12568323 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 12568324 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 12568383 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 12568384 AGATTAAGAGGAGGATA 12568400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||||||||||| ||||| || |||||| | ||| Sbjct 12575150 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 12575209 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 12575210 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 12575269 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 12575270 AGATTAAGAGGAGGATA 12575286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||||||||||| ||||| || |||||| | ||| Sbjct 16561293 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 16561234 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 16561233 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 16561174 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 16561173 AGATTAAGAGGAGGATA 16561157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||||||||||| ||||| || |||||| | ||| Sbjct 18441478 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 18441537 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 18441538 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 18441597 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 18441598 AGATTAAGAGGAGGATA 18441614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||||||||||| ||||| ||||||||| | ||| Sbjct 4820880 GAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAA 4820821 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 4820820 GAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 4820761 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 4820760 AGATTAAGAGGAGGATA 4820744 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||||||||||| ||||| ||||||||| | ||| Sbjct 17036643 GAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAA 17036702 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || | | ||||| || ||||| || ||||| || ||||| | || ||| Sbjct 17036703 GAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 17036762 Query 29175 CGATTACGAGGAGGGTA 29191 ||||| ||||||| || Sbjct 17036763 AGATTAAGAGGAGGATA 17036779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335994779655