Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=19924566 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||||||||||||||| ||||| || |||||||| ||| Sbjct 3528451 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 3528392 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || |||||| | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 3528391 GAAGGAAAAACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 3528332 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 3528331 AGATTAAGAGGAGGATA 3528315 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||||||||||||||| ||||| || |||||||| ||| Sbjct 12568264 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 12568323 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||| | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 12568324 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 12568383 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 12568384 AGATTAAGAGGAGGATA 12568400 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||||||||||||||| ||||| || |||||||| ||| Sbjct 12575150 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 12575209 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||| | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 12575210 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 12575269 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 12575270 AGATTAAGAGGAGGATA 12575286 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||||||||||||||| ||||| || |||||||| ||| Sbjct 16561293 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 16561234 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||| | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 16561233 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 16561174 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 16561173 AGATTAAGAGGAGGATA 16561157 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||||||||||||||| ||||| || |||||||| ||| Sbjct 18441478 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 18441537 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||| | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 18441538 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 18441597 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 18441598 AGATTAAGAGGAGGATA 18441614 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||||||||||||||| ||||| ||||||||||| ||| Sbjct 4820880 GAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAA 4820821 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 4820820 GAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 4820761 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 4820760 AGATTAAGAGGAGGATA 4820744 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||||||||||||||| ||||| ||||||||||| ||| Sbjct 17036643 GAAAAAGAAGGAATTCCACCTGATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAA 17036702 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || | | ||||| || |||||||| ||||| || ||||| | || ||| Sbjct 17036703 GAAGGAAAGACACTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 17036762 Query 25248 CGATTACGAGGAGGGTA 25264 ||||| ||||||| || Sbjct 17036763 AGATTAAGAGGAGGATA 17036779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796794993414