Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-43 >seq1 Length=19924566 Score = 190 bits (210), Expect = 3e-43 Identities = 185/237 (78%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||||| || || || ||||| || |||| ||||| |||| Sbjct 4820974 AATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAA 4820915 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| | | | ||| || |||||||| |||||||| || ||||||||||| Sbjct 4820914 TGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCA 4820855 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| |||||||||||||| ||||||||||| || | ||| | ||||||||| Sbjct 4820854 ACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAA 4820795 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA 124773 ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| Sbjct 4820794 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 4820738 Score = 190 bits (210), Expect = 3e-43 Identities = 185/237 (78%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||||| || || || ||||| || |||| ||||| |||| Sbjct 17036549 AATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAA 17036608 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| | | | ||| || |||||||| |||||||| || ||||||||||| Sbjct 17036609 TGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCA 17036668 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| |||||||||||||| ||||||||||| || | ||| | ||||||||| Sbjct 17036669 ACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTATAA 17036728 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA 124773 ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| Sbjct 17036729 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 17036785 Score = 185 bits (204), Expect = 1e-41 Identities = 185/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||||||| | |||||||| || || |||||||| || |||| | ||| || Sbjct 3528547 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 3528488 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| | ||| | | | || || || ||||| |||||||| || ||||| ||| Sbjct 3528487 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 3528428 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| |||||||||||||||||||||||||| || | ||| | ||||||| Sbjct 3528427 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTAT 3528368 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA 124773 || ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| Sbjct 3528367 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 3528309 Score = 179 bits (198), Expect = 6e-40 Identities = 184/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||||||| | |||||||| || || |||||||| || |||| | ||| || Sbjct 12568168 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 12568227 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| | ||| | | | || || || ||||| |||||||| || ||||| ||| Sbjct 12568228 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 12568287 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| |||||||||||||||||||||||||| || | || | ||||||| Sbjct 12568288 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTAT 12568347 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA 124773 || ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| Sbjct 12568348 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 12568406 Score = 179 bits (198), Expect = 6e-40 Identities = 184/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||||||| | |||||||| || || |||||||| || |||| | ||| || Sbjct 12575054 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 12575113 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| | ||| | | | || || || ||||| |||||||| || ||||| ||| Sbjct 12575114 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 12575173 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| |||||||||||||||||||||||||| || | || | ||||||| Sbjct 12575174 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTAT 12575233 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA 124773 || ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| Sbjct 12575234 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 12575292 Score = 179 bits (198), Expect = 6e-40 Identities = 184/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||||||| | |||||||| || || |||||||| || |||| | ||| || Sbjct 16561389 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 16561330 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| | ||| | | | || || || ||||| |||||||| || ||||| ||| Sbjct 16561329 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 16561270 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| |||||||||||||||||||||||||| || | || | ||||||| Sbjct 16561269 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTAT 16561210 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAA 124773 || ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| Sbjct 16561209 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 16561151 Score = 168 bits (186), Expect = 1e-36 Identities = 188/249 (76%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || || ||||| || |||| | ||| |||| Sbjct 18441384 AATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAA 18441443 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| | ||| | | | ||| || |||||||| |||||||| || ||||| ||||| Sbjct 18441444 TGACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCA 18441503 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| |||||||||||||||||||||||||| || | || | ||||||||| Sbjct 18441504 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 18441563 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATT 124776 ||||||||||||||||| | ||||| || ||| | ||| |||| || |||||||| | Sbjct 18441564 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA--T 18441621 Query 124777 CATAAAAAT 124785 || ||||| Sbjct 18441622 AATTAAAAT 18441630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455990556800