Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 >seq1 Length=19924566 Score = 132 bits (146), Expect = 7e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 3528317 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 3528376 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| | | || |||||||||||||| |||||||| | |||||| ||||| || || Sbjct 3528377 AAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 3528436 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 3528437 AATTCCTTCTTTTTCTTG 3528454 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 12568398 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 12568339 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | | || |||||||||||||| |||||||| | |||||| ||||| || || Sbjct 12568338 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 12568279 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 12568278 AATTCCTTCTTTTTCTTG 12568261 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 12575284 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 12575225 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | | || |||||||||||||| |||||||| | |||||| ||||| || || Sbjct 12575224 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 12575165 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 12575164 AATTCCTTCTTTTTCTTG 12575147 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 16561159 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 16561218 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | | || |||||||||||||| |||||||| | |||||| ||||| || || Sbjct 16561219 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 16561278 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 16561279 AATTCCTTCTTTTTCTTG 16561296 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 18441612 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 18441553 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | | || |||||||||||||| |||||||| | |||||| ||||| || || Sbjct 18441552 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 18441493 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 18441492 AATTCCTTCTTTTTCTTG 18441475 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 4820746 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 4820805 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | || ||||||||||| || |||||||| | |||||| ||||| || || Sbjct 4820806 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 4820865 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 4820866 AATTCCTTCTTTTTCTTG 4820883 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 17036777 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 17036718 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | || ||||||||||| || |||||||| | |||||| ||||| || || Sbjct 17036717 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 17036658 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 17036657 AATTCCTTCTTTTTCTTG 17036640 Score = 95.1 bits (104), Expect = 2e-14 Identities = 223/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 10300 TTACAGAAA-ATGCTTTTGAACCTATTAGACAGACATCAAAATCTGCAGGAATGGATTTA 10358 ||||| ||| |||| || |||| ||| ||| | |||| | ||| | |||||| Sbjct 14619759 TTACATAAAGATGCAATTATTCCTACAAGAGGAACAGAACAATCAGTAGGTTTTGATTTA 14619818 Query 10359 AAAAGTGCAT--ATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATT 10416 | || ||| ||||| ||||| ||| ||||||||| | ||||| || | Sbjct 14619819 TATAG--CATTGATGATAATATTATTTATCCACATGATAGATGTTTAATTTCTACAGGAA 14619876 Query 10417 TAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTC 10476 | | || ||||||| | ||||||| ||| | || || | || ||||| Sbjct 14619877 TTGCTGTACAAATTCCACATTTCTGTTATGGTAGAATTGCACCAGGTTCATCATTAGC-- 14619934 Query 10477 TAAATAAATTT---ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATG 10533 || ||||| | ||||||||||||| ||||| ||||| ||||||||||||||| | Sbjct 14619935 -AATTAAATATGGAATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAA 14619993 Query 10534 TGGGAGTAATATTATTTAATCATTCTAATGAAGAT-TTTATAATAAATAGAGGAGATAGA 10592 | ||||||| ||||||||||||| ||| | || | || | || | |||||||||| Sbjct 14619994 TAAAAGTAATAGTATTTAATCATTCAAAT-ACTATATATAGATGCAAGAAAGGAGATAGA 14620052 Query 10593 ATATCTCAA-TTAATATGTGAAAAAAT 10618 | | ||| ||| ||| ||||||||| Sbjct 14620053 GTTGCACAACTTATTAT-TGAAAAAAT 14620078 Score = 95.1 bits (104), Expect = 2e-14 Identities = 223/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 10300 TTACAGAAA-ATGCTTTTGAACCTATTAGACAGACATCAAAATCTGCAGGAATGGATTTA 10358 ||||| ||| |||| || |||| ||| ||| | |||| | ||| | |||||| Sbjct 15222722 TTACATAAAGATGCAATTATTCCTACAAGAGGAACAGAACAATCAGTAGGTTTTGATTTA 15222781 Query 10359 AAAAGTGCAT--ATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATT 10416 | || ||| ||||| ||||| ||| ||||||||| | ||||| || | Sbjct 15222782 TATAG--CATTGATGATAATATTATTTATCCACATGATAGATGTTTAATTTCTACAGGAA 15222839 Query 10417 TAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTC 10476 | | || ||||||| | ||||||| ||| | || || | || ||||| Sbjct 15222840 TTGCTGTACAAATTCCACATTTCTGTTATGGTAGAGTTGCACCACGTTCATCATTAGC-- 15222897 Query 10477 TAAATAAATTT---ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATG 10533 || ||||| | ||||||||||||| ||||| ||||| ||||||||||||||| | Sbjct 15222898 -AATTAAATATGGAATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAA 15222956 Query 10534 TGGGAGTAATATTATTTAATCATTCTAATGAAGAT-TTTATAATAAATAGAGGAGATAGA 10592 | ||||||| ||||||||||||| ||| | || | || | || | |||||||||| Sbjct 15222957 TAAAAGTAATAGTATTTAATCATTCAAAT-ACTATATATAGATGCAAGAAAGGAGATAGA 15223015 Query 10593 ATATCTCAA-TTAATATGTGAAAAAAT 10618 | | ||| ||| ||| ||||||||| Sbjct 15223016 GTTGCACAACTTATTAT-TGAAAAAAT 15223041 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/331 (68%), Gaps = 23/331 (7%) Strand=Plus/Minus Query 10300 TTACAGAAA-ATGCTTTTGAACCTATTAGACAGACATCAAAATCTGCAGGAATGGATTTA 10358 ||||| ||| |||| || |||| ||| ||| | |||| | ||| | |||||| Sbjct 16965142 TTACATAAAGATGCAATTATTCCTACAAGAGGAACAGAACAATCAGTAGGTTTTGATTTA 16965083 Query 10359 AAAAGTGCAT--ATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATT 10416 | || ||| ||||| ||||| ||| ||||||||| | ||||| || | Sbjct 16965082 TATAG--CATTGATGATAATATTATTTATCCACATGATAGATGTTTAATTTCTACAGGAA 16965025 Query 10417 TAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTC 10476 | | || ||||||| | ||||||| ||| | || || | || ||||| Sbjct 16965024 TTGCTGTACAAATTCCACATTTCTGTTATGGTAGAGTTGCACCACGTTCATCATTAGC-- 16964967 Query 10477 TAAATAAATTT---ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATG 10533 || ||||| | ||||||||||||| ||||| ||||| ||||||||||||||| | Sbjct 16964966 -AATTAAATATGGAATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAA 16964908 Query 10534 TGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAAT-----AGAGGAGA 10588 | ||||||| ||||||||||||| ||| | | ||| |||||| | |||||| Sbjct 16964907 TAAAAGTAATAGTATTTAATCATTCAAAT----ACTATAT-ATAAATGCAAGAAAGGAGA 16964853 Query 10589 TAGAATATCTCAA-TTAATATGTGAAAAAAT 10618 |||| | | ||| ||| ||| ||||||||| Sbjct 16964852 TAGAGTTGCACAACTTATTAT-TGAAAAAAT 16964823 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/331 (68%), Gaps = 23/331 (7%) Strand=Plus/Plus Query 10300 TTACAGAAA-ATGCTTTTGAACCTATTAGACAGACATCAAAATCTGCAGGAATGGATTTA 10358 ||||| ||| |||| || |||| ||| ||| | |||| | ||| | |||||| Sbjct 19066089 TTACATAAAGATGCAATTATTCCTACAAGAGGAACAGAACAATCAGTAGGTTTTGATTTA 19066148 Query 10359 AAAAGTGCAT--ATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATT 10416 | || ||| ||||| ||||| ||| ||||||||| | ||||| || | Sbjct 19066149 TATAG--CATTGATGATAATATTATTTATCCACATGATAGATGTTTAATTTCTACAGGAA 19066206 Query 10417 TAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTC 10476 | | || ||||||| | ||||||| ||| | || || | || ||||| Sbjct 19066207 TTGCTGTACAAATTCCACATTTCTGTTATGGTAGAGTTGCACCACGTTCATCATTAGC-- 19066264 Query 10477 TAAATAAATTT---ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATG 10533 || ||||| | ||||||||||||| ||||| ||||| ||||||||||||||| | Sbjct 19066265 -AATTAAATATGGAATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAA 19066323 Query 10534 TGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAAT-----AGAGGAGA 10588 | ||||||| ||||||||||||| ||| | | ||| |||||| | |||||| Sbjct 19066324 TAAAAGTAATAGTATTTAATCATTCAAAT----ACTATAT-ATAAATGCAAGAAAGGAGA 19066378 Query 10589 TAGAATATCTC-AATTAATATGTGAAAAAAT 10618 |||| | ||| | ||| ||| ||||||||| Sbjct 19066379 TAGAGTTGCTCTACTTATTAT-TGAAAAAAT 19066408 Score = 95.1 bits (104), Expect = 2e-14 Identities = 200/291 (69%), Gaps = 22/291 (8%) Strand=Plus/Plus Query 10339 AATCTGCAGGAATGGATTTAAAAAGTGCAT--ATGATTATATTGTTTCAGCACATGATAA 10396 |||| ||||| | |||||| | || ||| ||||| ||||| ||| ||||||||| Sbjct 19655202 AATCAGCAGGTTTTGATTTATATAG--CATTGATGATAATATTATTTATCCACATGATAG 19655259 Query 10397 AAAATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGC 10456 | ||||| || | | | || |||| || | ||||||| ||| | || Sbjct 19655260 ATGTTTAATTTCTACAGGAATTGCTGTACAAATCCCACATTTCTGTTATGGGAGAGTTGC 19655319 Query 10457 TCCCAGATCTGATTTAGCTCTAAATAAATTT---ATTGATATTGGAGCTGGAGTAATTGA 10513 || | || ||||| || ||||| | ||||||||||||| ||||| ||||| Sbjct 19655320 ACCACGTTCATCATTAGC---AATTAAATATGGAATTGATATTGGAGGAGGAGTTATTGA 19655376 Query 10514 CGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTAT 10573 ||||||||||||||| | | ||||||| ||||||||||||| ||| | | ||| Sbjct 19655377 TGAAGATTATAGAGGAGAAATAAAAGTAATAGTATTTAATCATTCAAAT----ACTATAT 19655432 Query 10574 AATAAAT-----AGAGGAGATAGAATATCTC-AATTAATATGTGAAAAAAT 10618 |||||| | |||||||||| | ||| | ||| ||| ||||||||| Sbjct 19655433 -ATAAATGCAAGAAAGGAGATAGAGTTGCTCTACTTATTAT-TGAAAAAAT 19655481 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 10488 ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTA 10547 ||||||||||||| ||||| ||||| ||||||||||||||| | | ||||||| || Sbjct 18053061 ATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAATAAAAGTAATAGTA 18053002 Query 10548 TTTAATCATTCTAATGAAGAT-TTTATAATAAATAGAGGAGATAGAATATCTCAA-TTAA 10605 ||||||||||| ||| | || | || | || | |||||||||| | | ||| ||| Sbjct 18053001 TTTAATCATTCAAAT-ACTATATATAGATGCAAGAAAGGAGATAGAGTTGCACAACTTAT 18052943 Query 10606 TATGTGAAAAAAT 10618 ||| ||||||||| Sbjct 18052942 TAT-TGAAAAAAT 18052931 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/137 (77%), Gaps = 12/137 (9%) Strand=Plus/Minus Query 10488 ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTA 10547 ||||||||||||| ||||| ||||| ||||||||||||||| | | ||||||| || Sbjct 19046340 ATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAATAAAAGTAATAGTA 19046281 Query 10548 TTTAATCATTCTAATGAAGATTTTATAATAAAT-----AGAGGAGATAGAATATCTC-AA 10601 ||||||||||| ||| | | ||| |||||| | |||||||||| | ||| | Sbjct 19046280 TTTAATCATTCAAAT----ACTATAT-ATAAATGCAAGAAAGGAGATAGAGTTGCTCTAC 19046226 Query 10602 TTAATATGTGAAAAAAT 10618 ||| ||| ||||||||| Sbjct 19046225 TTATTAT-TGAAAAAAT 19046210 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/325 (68%), Gaps = 11/325 (3%) Strand=Plus/Plus Query 10300 TTACAGAAA-ATGCTTTTGAACCTATTAGACAGACATCAAAATCTGCAGGAATGGATTTA 10358 ||||| ||| |||| || |||| ||| ||| | |||| | ||| | |||||| Sbjct 19547951 TTACATAAAGATGCAATTATTCCTACAAGAGGAACAGAACAATCAGTAGGTTTTGATTTA 19548010 Query 10359 AAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTA 10418 | ||| ||||| ||||| ||| ||||||||| | ||||| || | | Sbjct 19548011 TATAGTATTGATGATAATATTATTTATCCACATGATAGATGTTTAATTTCTACAGGAATT 19548070 Query 10419 ATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTA 10478 | || |||| || | ||||||| ||| | || || | || ||||| | Sbjct 19548071 GCTGTACAAATCCCACATTTCTGTTATGGGAGAGTTGCACCACGTTCATCATTAGC---A 19548127 Query 10479 AATAAATTT---ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTG 10535 | ||||| | ||||||||||||| ||||| ||||| ||||||||||||||| | | Sbjct 19548128 ATTAAATATGGAATTGATATTGGAGGAGGAGTTATTGATGAAGATTATAGAGGAGAAATA 19548187 Query 10536 GGAGTAATATTATTTAATCATTCTAATGAAGAT-TTTATAATAAATAGAGGAGATAGAAT 10594 ||||||| ||||||||||||| ||| | || | || | || | |||||||||| | Sbjct 19548188 AAAGTAATAGTATTTAATCATTCAAAT-ACTATATATAGATGCAAGAAAGGAGATAGAGT 19548246 Query 10595 ATCTCAA-TTAATATGTGAAAAAAT 10618 | ||| ||| ||| ||||||||| Sbjct 19548247 TGCACAACTTATTAT-TGAAAAAAT 19548270 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 77446 TATTTACATAAAAATTCTATTGTTCATTGTGATTTAAAACCAGAGAATATATTATGTAAA 77505 ||| | ||||||||| ||||| ||| | ||| | |||||||| |||||||||||| | Sbjct 14264793 TATCTTCATAAAAATAATATTGCACATCGAGATCTTAAACCAGAAAATATATTATGTGTA 14264734 Query 77506 TATAAAAATGATACATTGCATCTTGTTATAACAGATTTTGGATTATC 77552 ||||||| ||| |||| || || ||| | |||||||||||||| Sbjct 14264733 TATAAAA---ATAAATTGTATATTAAAATAGCTGATTTTGGATTATC 14264690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526390705920