Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=19924566 Score = 113 bits (124), Expect = 4e-20 Identities = 264/395 (67%), Gaps = 5/395 (1%) Strand=Plus/Minus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 14620172 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 14620113 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| ||| || || Sbjct 14620112 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAAC 14620053 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || || || || | || || ||||| | ||| ||| || Sbjct 14620052 TCTATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 14619993 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAAC 11822 | || |||||||||||||| |||||||||||||| ||||| || ||||| | || | Sbjct 14619992 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 14619933 Query 11823 GAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA 11882 || || || | ||| || |||| |||||||| | |||||| || | || Sbjct 14619932 TAATGA--TGAACCTGGTGCAATTCTACCATAACAGAAATGTGGAATTTGTACAGCAATT 14619875 Query 11883 TCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAA 11942 | || || |||| ||| || | || | || |||| ||||| | ||||||||| Sbjct 14619874 CCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAA 14619815 Query 11943 TCATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 ||| | ||| | || |||||| | | ||||| Sbjct 14619814 TCAAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 14619780 Score = 113 bits (124), Expect = 4e-20 Identities = 264/395 (67%), Gaps = 5/395 (1%) Strand=Plus/Plus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 16964729 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 16964788 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| ||| || || Sbjct 16964789 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAAC 16964848 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || ||| || || | || || ||||| | ||| ||| || Sbjct 16964849 TCTATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 16964908 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAAC 11822 | || |||||||||||||| |||||||||||||| ||||| || ||||| | || | Sbjct 16964909 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 16964968 Query 11823 GAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA 11882 || || || | ||| || | || |||||||| | |||||| || | || Sbjct 16964969 TAATGA--TGAACGTGGTGCAACTCTACCATAACAGAAATGTGGAATTTGTACAGCAATT 16965026 Query 11883 TCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAA 11942 | || || |||| ||| || | || | || |||| ||||| | ||||||||| Sbjct 16965027 CCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAA 16965086 Query 11943 TCATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 ||| | ||| | || |||||| | | ||||| Sbjct 16965087 TCAAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 16965121 Score = 113 bits (124), Expect = 4e-20 Identities = 264/395 (67%), Gaps = 5/395 (1%) Strand=Plus/Plus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 19046116 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 19046175 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| | | || || Sbjct 19046176 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTAGAGCAAC 19046235 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || ||| || || | || || ||||| | ||| ||| || Sbjct 19046236 TCTATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 19046295 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAAC 11822 | || |||||||||||||| |||||||||||||| ||||| || ||||| | || | Sbjct 19046296 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 19046355 Query 11823 GAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA 11882 || || || | ||| || |||| |||||||| | ||| || || | || Sbjct 19046356 TAATGA--TGAACGTGGTGCAATTCTACCATAACAGGAATGTGGGATTTGTACAGCAATT 19046413 Query 11883 TCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAA 11942 | || || |||| ||| || | || | || |||| ||||| | |||||||||| Sbjct 19046414 CCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATACTATATAAA 19046473 Query 11943 TCATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 || | ||||| || ||||| | | | ||||| Sbjct 19046474 ACAAAACCTGCTGATTGATCTGATCCTCTTGTAGG 19046508 Score = 111 bits (122), Expect = 2e-19 Identities = 261/393 (66%), Gaps = 1/393 (0%) Strand=Plus/Plus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 18052837 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 18052896 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| ||| || || Sbjct 18052897 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAAC 18052956 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || || || || | || || ||||| | ||| ||| || Sbjct 18052957 TCTATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 18053016 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGA 11824 | || |||||||||||||| |||||||||||||| ||||| || ||||| | | | Sbjct 18053017 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 18053076 Query 11825 AAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATC 11884 || || | ||| || |||| |||||||| | ||| || || | || | Sbjct 18053077 TAGTGATGAACCTGGTGCAATTCTACCATAACAGGAATGTGGGATTTGTACAGCAATTCC 18053136 Query 11885 AGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATC 11944 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 18053137 TGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATACTATATAAATC 18053196 Query 11945 ATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 | | ||| | || |||||| | | ||||| Sbjct 18053197 AAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 18053229 Score = 109 bits (120), Expect = 5e-19 Identities = 263/395 (67%), Gaps = 5/395 (1%) Strand=Plus/Minus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 15223135 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 15223076 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| ||| || || Sbjct 15223075 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAAC 15223016 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || || || || | || || ||||| | ||| ||| || Sbjct 15223015 TCTATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 15222956 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAAC 11822 | || |||||||||||||| |||||||||||||| ||||| || ||||| | || | Sbjct 15222955 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 15222896 Query 11823 GAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA 11882 || || || | ||| || | || |||||||| | |||||| || | || Sbjct 15222895 TAATGA--TGAACGTGGTGCAACTCTACCATAACAGAAATGTGGAATTTGTACAGCAATT 15222838 Query 11883 TCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAA 11942 | || || |||| ||| || | || | || |||| ||||| | ||||||||| Sbjct 15222837 CCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAA 15222778 Query 11943 TCATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 ||| | ||| | || |||||| | | ||||| Sbjct 15222777 TCAAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 15222743 Score = 109 bits (120), Expect = 5e-19 Identities = 263/395 (67%), Gaps = 5/395 (1%) Strand=Plus/Minus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 19066502 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 19066443 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| | | || || Sbjct 19066442 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTAGAGCAAC 19066383 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || ||| || || | || || ||||| | ||| ||| || Sbjct 19066382 TCTATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 19066323 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAAC 11822 | || |||||||||||||| |||||||||||||| ||||| || ||||| | || | Sbjct 19066322 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 19066263 Query 11823 GAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA 11882 || || || | ||| || | || |||||||| | |||||| || | || Sbjct 19066262 TAATGA--TGAACGTGGTGCAACTCTACCATAACAGAAATGTGGAATTTGTACAGCAATT 19066205 Query 11883 TCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAA 11942 | || || |||| ||| || | || | || |||| ||||| | ||||||||| Sbjct 19066204 CCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAA 19066145 Query 11943 TCATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 ||| | ||| | || |||||| | | ||||| Sbjct 19066144 TCAAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 19066110 Score = 109 bits (120), Expect = 5e-19 Identities = 262/393 (67%), Gaps = 5/393 (1%) Strand=Plus/Minus Query 11588 AAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTA 11646 |||||| ||| || | || |||| |||||||| || | |||| |||| || || Sbjct 19548362 AAAAAATTATTCATTTACCCGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTA 19548303 Query 11647 AACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCACTC 11706 ||| ||||||| |||||| | || || |||||||| ||||| ||| || |||| Sbjct 19548302 TTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAACTC 19548243 Query 11707 GATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGT 11766 ||| ||| | || || || || | || || ||||| | ||| ||| || | Sbjct 19548242 TATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTT 19548183 Query 11767 TACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGA 11824 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | | Sbjct 19548182 CTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTA 19548123 Query 11825 AAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATC 11884 | || || | ||| || | || |||||||| | ||| || || | || | Sbjct 19548122 ATGA--TGAACGTGGTGCAACTCTCCCATAACAGAAATGTGGGATTTGTACAGCAATTCC 19548065 Query 11885 AGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATC 11944 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 19548064 TGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATACTATATAAATC 19548005 Query 11945 ATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 | | ||| | || |||||| | | ||||| Sbjct 19548004 AAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 19547972 Score = 109 bits (120), Expect = 5e-19 Identities = 263/395 (67%), Gaps = 5/395 (1%) Strand=Plus/Minus Query 11586 ATAAAAAACTATA-ATATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATC 11644 || ||||| ||| || | || |||| |||||||| || | |||| |||| || Sbjct 19655575 ATCAAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACT 19655516 Query 11645 TAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCAC 11704 || ||| ||||||| |||||| | || || |||||||| ||||| | | || || Sbjct 19655515 TATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTAGAGCAAC 19655456 Query 11705 TCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAAT 11764 || ||| ||| | || ||| || || | || || ||||| | ||| ||| || Sbjct 19655455 TCTATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTAT 19655396 Query 11765 GTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAAC 11822 | || |||||||||||||| |||||||||||||| ||||| || ||||| | || | Sbjct 19655395 TTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGC 19655336 Query 11823 GAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA 11882 || || || | ||| || | || |||||||| | ||| || || | || Sbjct 19655335 TAATGA--TGAACGTGGTGCAACTCTCCCATAACAGAAATGTGGGATTTGTACAGCAATT 19655278 Query 11883 TCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAA 11942 | || || |||| ||| || | || | || |||| ||||| | ||||||||| Sbjct 19655277 CCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAA 19655218 Query 11943 TCATATCCTGCAGAAAAATCTGTTGATTTGGTAGG 11977 ||| | ||||| || ||||| | | | ||||| Sbjct 19655217 TCAAAACCTGCTGATTGATCTGATCCTCTTGTAGG 19655183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345593970680