Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=19924566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 73394 AGAAAGATTAACTGGAAAAGAAGGTCAAATAAGAAACAATTTATTAGGTAAAAGGTGTGA 73453 ||||||| | | | ||| ||||| | ||||| ||| || | || ||||| ||| Sbjct 10946368 AGAAAGACTTTCAAGTAAACAAGGTAGATTAAGATTAAATCTAATGGGAAAAAGAGTTGA 10946427 Query 73454 AATGTCTGCTAGAACTGTTATAGGACCAGATCCAACACTAAAAATTGATGAAGTAATTGT 73513 | ||||| ||||| ||||| ||||||||||| || ||| |||||||| || Sbjct 10946428 TTTTTCTGCCAGAACAGTTATTTCACCAGATCCAAATTTATCAATGGATGAAGTTGGAGT 10946487 Query 73514 TCCAAAAGAAATTGCTCAATCTTTAACTTTTCCTGACTTTGTTAACAAACACAATATAGA 73573 |||| || | ||||| || |||||| ||||| || | |||| |||| |||| ||| Sbjct 10946488 ACCAACAGGAGTTGCTAAAATTTTAACATTTCCAGAAGTAGTTACTCAACATAATAAAGA 10946547 Query 73574 TAGATTGACTAAATTAGTTAATTCTGGTAATG 73605 | ||| |||||||||| | |||| |||| Sbjct 10946548 AAAATTACAGAAATTAGTTAGTGCTGG-AATG 10946578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 74046 CCATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAA 74105 |||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||| Sbjct 11551574 CCATATAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTGCCACAAACAGAAGAA 11551515 Query 74106 AGTAAAGCTGA 74116 | |||||| Sbjct 11551514 GCAAGAGCTGA 11551504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679814391502320