Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 >seq1 Length=19924566 Score = 113 bits (124), Expect = 3e-20 Identities = 197/283 (70%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 18049 TATGTTCAATAGTTTAATaaaaaattaaaaaTACATTTTCTTTTTGTTA---TCCTCCCC 18105 |||||| ||| | || |||||| |||| | ||||| || | ||| |||||| | Sbjct 18441661 TATGTTTAAT---TCAAACAAAAATAAAAAGAATATTTTAATTATTTTAATATCCTCCTC 18441605 Query 18106 GTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTT 18165 || ||| | || | |||||||||||||||||||||||||| || || | | || | Sbjct 18441604 TTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCT 18441545 Query 18166 TACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTT 18225 | | ||||| |||||||| || ||| | ||||||||||||||||| || | |||| Sbjct 18441544 TTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTT 18441485 Query 18226 CCTTATCGGCAATTTGTTGCTTGACCTG-TGCAACAGTGTCACCGGGCTCGGTTTCAATG 18284 | || || ||| | | |||| | | ||| || |||| || ||| ||| | Sbjct 18441484 CTTTTTCTTGAATCT-TAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACTTCTAAT 18441426 Query 18285 GTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTT 18327 ||||| | || || || | ||||| ||||| |||||||||| Sbjct 18441425 GTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTT 18441383 Score = 107 bits (118), Expect = 1e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| |||||||| | || ||| | || | |||||||||||||||||||||||||| Sbjct 4820738 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 4820797 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | ||| || | ||||| ||||||||||| ||| | ||||||||||||||| Sbjct 4820798 TAATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGA 4820857 Query 18210 TC 18211 || Sbjct 4820858 TC 4820859 Score = 107 bits (118), Expect = 1e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| |||||||| | || ||| | || | |||||||||||||||||||||||||| Sbjct 17036785 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 17036726 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | ||| || | ||||| ||||||||||| ||| | ||||||||||||||| Sbjct 17036725 TAATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGA 17036666 Query 18210 TC 18211 || Sbjct 17036665 TC 17036664 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| |||||||| | || ||| | || | |||||||||||||||||||||||||| Sbjct 3528309 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 3528368 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | ||||| | ||||| |||||||| || ||| | ||||||||||||||| Sbjct 3528369 TAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGA 3528428 Query 18210 TC 18211 || Sbjct 3528429 TC 3528430 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| |||||||| | || ||| | || | |||||||||||||||||||||||||| Sbjct 12568406 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 12568347 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | || || | ||||| |||||||| || ||| | ||||||||||||||| Sbjct 12568346 TAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGA 12568287 Query 18210 TC 18211 || Sbjct 12568286 TC 12568285 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| |||||||| | || ||| | || | |||||||||||||||||||||||||| Sbjct 12575292 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 12575233 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | || || | ||||| |||||||| || ||| | ||||||||||||||| Sbjct 12575232 TAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGA 12575173 Query 18210 TC 18211 || Sbjct 12575172 TC 12575171 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| |||||||| | || ||| | || | |||||||||||||||||||||||||| Sbjct 16561151 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 16561210 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | || || | ||||| |||||||| || ||| | ||||||||||||||| Sbjct 16561211 TAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGA 16561270 Query 18210 TC 18211 || Sbjct 16561271 TC 16561272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343995376745