Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 >seq1 Length=19924566 Score = 122 bits (134), Expect = 8e-23 Identities = 264/392 (67%), Gaps = 5/392 (1%) Strand=Plus/Plus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 19046119 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 19046178 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| | |||| || | Sbjct 19046179 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTAGAGCAACTCT 19046238 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || ||| || || | || || ||||| | ||| ||| || | Sbjct 19046239 ATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 19046298 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGAA 11492 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | || Sbjct 19046299 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAA 19046358 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCA 11552 || || | ||| || |||| |||||||| | ||| || || | || | Sbjct 19046359 TGA--TGAACGTGGTGCAATTCTACCATAACAGGAATGTGGGATTTGTACAGCAATTCCT 19046416 Query 11553 GTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCA 11612 || || |||| ||| || | || | || |||| ||||| | |||||||||| || Sbjct 19046417 GTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATACTATATAAAACA 19046476 Query 11613 TATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 | ||||| || ||||| | | ||||||| Sbjct 19046477 AAACCTGCTGATTGATCTGATCCTCTTGTAGG 19046508 Score = 116 bits (128), Expect = 4e-21 Identities = 263/392 (67%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 14620169 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 14620110 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| ||| || || | Sbjct 14620109 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAACTCT 14620050 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || || || || | || || ||||| | ||| ||| || | Sbjct 14620049 ATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 14619990 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGAA 11492 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | || Sbjct 14619989 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAA 14619930 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCA 11552 || || | ||| || |||| |||||||| | |||||| || | || | Sbjct 14619929 TGA--TGAACCTGGTGCAATTCTACCATAACAGAAATGTGGAATTTGTACAGCAATTCCT 14619872 Query 11553 GTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCA 11612 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 14619871 GTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAATCA 14619812 Query 11613 TATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 | ||| | || |||||| | ||||||| Sbjct 14619811 AAACCTACTGATTGTTCTGTTCCTCTTGTAGG 14619780 Score = 116 bits (128), Expect = 4e-21 Identities = 263/392 (67%), Gaps = 5/392 (1%) Strand=Plus/Plus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 16964732 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 16964791 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| ||| || || | Sbjct 16964792 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAACTCT 16964851 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || ||| || || | || || ||||| | ||| ||| || | Sbjct 16964852 ATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 16964911 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGAA 11492 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | || Sbjct 16964912 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAA 16964971 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCA 11552 || || | ||| || | || |||||||| | |||||| || | || | Sbjct 16964972 TGA--TGAACGTGGTGCAACTCTACCATAACAGAAATGTGGAATTTGTACAGCAATTCCT 16965029 Query 11553 GTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCA 11612 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 16965030 GTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAATCA 16965089 Query 11613 TATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 | ||| | || |||||| | ||||||| Sbjct 16965090 AAACCTACTGATTGTTCTGTTCCTCTTGTAGG 16965121 Score = 116 bits (128), Expect = 4e-21 Identities = 263/392 (67%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 19066499 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 19066440 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| | |||| || | Sbjct 19066439 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTAGAGCAACTCT 19066380 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || ||| || || | || || ||||| | ||| ||| || | Sbjct 19066379 ATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 19066320 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGAA 11492 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | || Sbjct 19066319 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAA 19066260 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCA 11552 || || | ||| || | || |||||||| | |||||| || | || | Sbjct 19066259 TGA--TGAACGTGGTGCAACTCTACCATAACAGAAATGTGGAATTTGTACAGCAATTCCT 19066202 Query 11553 GTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCA 11612 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 19066201 GTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAATCA 19066142 Query 11613 TATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 | ||| | || |||||| | ||||||| Sbjct 19066141 AAACCTACTGATTGTTCTGTTCCTCTTGTAGG 19066110 Score = 116 bits (128), Expect = 4e-21 Identities = 263/392 (67%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 19655572 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 19655513 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| | |||| || | Sbjct 19655512 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTAGAGCAACTCT 19655453 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || ||| || || | || || ||||| | ||| ||| || | Sbjct 19655452 ATCTCCTTTCTTGCATTTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 19655393 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGAA 11492 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | || Sbjct 19655392 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAA 19655333 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCA 11552 || || | ||| || | || |||||||| | ||| || || | || | Sbjct 19655332 TGA--TGAACGTGGTGCAACTCTCCCATAACAGAAATGTGGGATTTGTACAGCAATTCCT 19655275 Query 11553 GTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCA 11612 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 19655274 GTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAATCA 19655215 Query 11613 TATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 | ||||| || ||||| | | ||||||| Sbjct 19655214 AAACCTGCTGATTGATCTGATCCTCTTGTAGG 19655183 Score = 114 bits (126), Expect = 1e-20 Identities = 260/390 (67%), Gaps = 1/390 (0%) Strand=Plus/Plus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 18052840 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 18052899 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| ||| || || | Sbjct 18052900 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAACTCT 18052959 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || || || || | || || ||||| | ||| ||| || | Sbjct 18052960 ATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 18053019 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAG 11494 || |||||||||||||| |||||||||||||| ||||| || ||||| | | | || Sbjct 18053020 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAG 18053079 Query 11495 ACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCAGT 11554 || | ||| || |||| |||||||| | ||| || || | || | || Sbjct 18053080 TGATGAACCTGGTGCAATTCTACCATAACAGGAATGTGGGATTTGTACAGCAATTCCTGT 18053139 Query 11555 TTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATA 11614 || |||| ||| || | || | || |||| ||||| | ||||||||||||| | Sbjct 18053140 AGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATACTATATAAATCAAA 18053199 Query 11615 TCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 ||| | || |||||| | ||||||| Sbjct 18053200 ACCTACTGATTGTTCTGTTCCTCTTGTAGG 18053229 Score = 114 bits (126), Expect = 1e-20 Identities = 265/396 (67%), Gaps = 5/396 (1%) Strand=Plus/Minus Query 11252 ATaaaaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCAT 11310 || |||||| ||| || |||| |||| |||||||| || | |||| |||| || Sbjct 19548365 ATCAAAAAATTATTCATTTACCCGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCAC 19548306 Query 11311 CTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCA 11370 || ||| ||||||| |||||| | || || |||||||| ||||| ||| || | Sbjct 19548305 TTATTTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAA 19548246 Query 11371 CCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAA 11430 | | ||| ||| | || || || || | || || ||||| | ||| ||| | Sbjct 19548245 CTCTATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTA 19548186 Query 11431 TGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAA 11488 | | || |||||||||||||| |||||||||||||| ||||| || ||||| | || Sbjct 19548185 TTTCTCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTG 19548126 Query 11489 CGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTAT 11548 | || || || | ||| || | || |||||||| | ||| || || | || Sbjct 19548125 CTAATGA--TGAACGTGGTGCAACTCTCCCATAACAGAAATGTGGGATTTGTACAGCAAT 19548068 Query 11549 ATCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAA 11608 | || || |||| ||| || | || | || |||| ||||| | ||||||||| Sbjct 19548067 TCCTGTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATACTATATAA 19548008 Query 11609 ATCATATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 |||| | ||| | || |||||| | ||||||| Sbjct 19548007 ATCAAAACCTACTGATTGTTCTGTTCCTCTTGTAGG 19547972 Score = 113 bits (124), Expect = 4e-20 Identities = 262/392 (67%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 11256 aaaaaCTATA-ATATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAA 11314 ||||| ||| || |||| |||| |||||||| || | |||| |||| || || Sbjct 15223132 AAAAATTATTCATTTACCTGTTGATCCAAATCCTTTCTCTCCTCTTATTGTTTCACTTAT 15223073 Query 11315 ACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCG 11374 ||| ||||||| |||||| | || || |||||||| ||||| ||| || || | Sbjct 15223072 TTCTTTCACTTCTTCAATTTTACATTGTTTTATTTTTTCAATAATAAGTTGTGCAACTCT 15223013 Query 11375 ATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTT 11434 ||| ||| | || || || || | || || ||||| | ||| ||| || | Sbjct 15223012 ATCTCCTTTCTTGCATCTATATATAGTATTTGAATGATTAAATACTATTACTTTTATTTC 15222953 Query 11435 ACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAAT--ATAACGAA 11492 || |||||||||||||| |||||||||||||| ||||| || ||||| | || | || Sbjct 15222952 TCCTCTATAATCTTCATCAATAACTCCTCCTCCAATATCAATTCCATATTTAATTGCTAA 15222893 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCA 11552 || || | ||| || | || |||||||| | |||||| || | || | Sbjct 15222892 TGA--TGAACGTGGTGCAACTCTACCATAACAGAAATGTGGAATTTGTACAGCAATTCCT 15222835 Query 11553 GTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATAATCATAAGCACTATATAAATCA 11612 || || |||| ||| || | || | || |||| ||||| | |||||||||||| Sbjct 15222834 GTAGAAATTAAACATCTATCATGTGGATAAATAATATTATCATCAATGCTATATAAATCA 15222775 Query 11613 TATCCTGCAGAAAAATCTGTTGATTTTGTAGG 11644 | ||| | || |||||| | ||||||| Sbjct 15222774 AAACCTACTGATTGTTCTGTTCCTCTTGTAGG 15222743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727994003400