Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=19924566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 282/422 (67%), Gaps = 22/422 (5%) Strand=Plus/Minus Query 89531 TATTCAGTTGATAATCGGCCCCATGTTTTCAGGTAAAAGTACAGAATTAATTAGACGAGT 89590 |||||| || || || || || |||||| ||||||| ||| |||||||| |||| | Sbjct 4694837 TATTCAATTAATTATTGGTCCTATGTTTAGTGGTAAAACTACTGAATTAATAAGACTTAT 4694778 Query 89591 TAGACGTTATCAAATAGCTCAATATAAATGC-GTGACTATAAAATATTCTAACGATAATA 89649 || | | | | | ||| ||| | || | | || ||| ||||| ||||| |||| || Sbjct 4694777 TAAAAGGTTT-AGATATTCCAAAAAAACTACTGTTGTTATTAAATACTCTAAGGATACTA 4694719 Query 89650 GATACGGAACGGGACTATGGA-------CACATGATAA-GAATAATTTTGAAGC-ATTGG 89700 | || ||| ||| | ||| | | |||||||| |||| || |||| ||| Sbjct 4694718 GGTATGGATCGGAAG-ATGAAGCTATTTCTCATGATAAAGAATCATGGA-AAGCTATTCC 4694661 Query 89701 AAGCAACTAAACTATGCGATGTCATGGA--CGCAGTTACAGATTTCTCTGTGATAGGTAT 89758 || || || |||| | | || | ||| ||| ||| || || ||||| Sbjct 4694660 AACCATGAAATTAATGCCAGTACTTGAAACCGCTCTTA---ATTATGAAGTTATTGGTAT 4694604 Query 89759 CGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG-GCAAACGAAG 89817 |||||||| |||||||| |||||| | | || || | ||| | ||| |||| | | Sbjct 4694603 TGATGAAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAG-GCATGTGCAAGTTATG 4694545 Query 89818 GAAAGATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCGTTTA-ATAAT 89876 ||| | || || |||| ||| | ||||| ||||| ||| | ||||| ||| | || Sbjct 4694544 GAAGATTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAAAACCATTTGGACAAA 4694485 Query 89877 ATATTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAA 89936 || || ||||||||||||||| ||||| || ||| ||| |||||| ||| | || Sbjct 4694484 TTACTG-ATCTTATTCCATTATGTGAAAGCGTAAAAAAGTTAAGTGCTGTTTGTGTTAAT 4694426 Query 89937 TG 89938 || Sbjct 4694425 TG 4694424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139191610760