Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=19924566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | || |||||||||| ||| ||||||||||| ||||| ||||| Sbjct 4820747 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 4820806 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | |||||| || ||| | || || | ||| ||||| || || Sbjct 4820807 AGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGA 4820866 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTT--TAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 || |||||||| || ||| || ||| |||| || | | || | ||||| | Sbjct 4820867 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC--ATCAATAGAATCATTTGGTTCAA 4820924 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | ||||| || || | ||| || || || |||||||| Sbjct 4820925 CTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 4820973 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | || |||||||||| ||| ||||||||||| ||||| ||||| Sbjct 17036776 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 17036717 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | |||||| || ||| | || || | ||| ||||| || || Sbjct 17036716 AGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGA 17036657 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTT--TAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 || |||||||| || ||| || ||| |||| || | | || | ||||| | Sbjct 17036656 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC--ATCAATAGAATCATTTGGTTCAA 17036599 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | ||||| || || | ||| || || || |||||||| Sbjct 17036598 CTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 17036550 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | || |||||||||| ||| ||||||||||| ||||| ||||| Sbjct 18441611 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 18441552 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||| || ||| | || || | ||| ||||| || || Sbjct 18441551 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 18441492 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTT--TAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 || |||||||| || ||| || ||| |||| || | | ||| | ||||| | Sbjct 18441491 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC--ATCAATAGAGTCATTTGGTTCGA 18441434 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | ||||| || || | ||||| || || |||||||| Sbjct 18441433 CTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014393662320