Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 122 6e-23 >seq1 Length=19924566 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 3528318 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 3528377 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| || | | |||||||||||||| || || | || | | |||||| || |||| Sbjct 3528378 AGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 3528437 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || || ||| | | || || | ||| | ||| || Sbjct 3528438 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 3528497 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 3528498 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 4820747 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 4820806 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||||||||||||| || | || | | |||||| || |||| Sbjct 4820807 AGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGA 4820866 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || ||| || ||| || | | || || | ||| | ||| || Sbjct 4820867 ATTCCTTCTTTTTCTTGAATCTTAGCT-TTAATAGCATCAATAGAATCATTTGGTTCAAC 4820925 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| ||||| || || || || || || || ||||| |||||||| || Sbjct 4820926 TTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 17036776 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 17036717 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||||||||||||| || | || | | |||||| || |||| Sbjct 17036716 AGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGA 17036657 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || ||| || ||| || | | || || | ||| | ||| || Sbjct 17036656 ATTCCTTCTTTTTCTTGAATCTTAGCT-TTAATAGCATCAATAGAATCATTTGGTTCAAC 17036598 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| ||||| || || || || || || || ||||| |||||||| || Sbjct 17036597 TTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 18441611 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 18441552 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| || || | || | | |||||| || |||| Sbjct 18441551 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 18441492 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || ||| || ||| || | | || || | || | ||| || Sbjct 18441491 ATTCCTTCTTTTTCTTGAATCTTAGCT-TTAATAGCATCAATAGAGTCATTTGGTTCGAC 18441433 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || || |||||||| ||||| |||||||| Sbjct 18441432 TTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 12568397 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 12568338 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| || || | || | | |||||| || |||| Sbjct 12568337 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 12568278 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || || ||| | | || || | ||| | ||| || Sbjct 12568277 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 12568218 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 12568217 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 12575283 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 12575224 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| || || | || | | |||||| || |||| Sbjct 12575223 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 12575164 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || || ||| | | || || | ||| | ||| || Sbjct 12575163 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 12575104 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 12575103 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 16561160 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 16561219 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| || || | || | | |||||| || |||| Sbjct 16561220 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 16561279 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || || ||| | | || || | ||| | ||| || Sbjct 16561280 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 16561339 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 16561340 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179195585941