Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 >seq1 Length=19924566 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 4820747 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 4820805 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | | | || || |||||||| |||||||| || | | ||| || || | || Sbjct 4820806 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 4820865 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| | | ||| || ||| || || || Sbjct 4820866 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAAC 4820925 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 4820926 TTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 4820973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 17036776 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 17036718 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | | | || || |||||||| |||||||| || | | ||| || || | || Sbjct 17036717 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 17036658 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| | | ||| || ||| || || || Sbjct 17036657 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAAC 17036598 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 17036597 TTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 17036550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 12568397 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 12568339 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | | || || ||||||||||||||||| || | | ||| || || | || Sbjct 12568338 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 12568279 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| || || || | | ||| || ||| || || || Sbjct 12568278 AATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGAC 12568219 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 12568218 TTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 12575283 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 12575225 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | | || || ||||||||||||||||| || | | ||| || || | || Sbjct 12575224 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 12575165 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| || || || | | ||| || ||| || || || Sbjct 12575164 AATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGAC 12575105 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 12575104 TTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 16561160 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 16561218 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | | || || ||||||||||||||||| || | | ||| || || | || Sbjct 16561219 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 16561278 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| || || || | | ||| || ||| || || || Sbjct 16561279 AATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGAC 16561338 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 16561339 TTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 18441611 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 18441553 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | | || || ||||||||||||||||| || | | ||| || || | || Sbjct 18441552 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 18441493 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTA---TCTGCCGGCTC 44070 | |||||||| ||| ||| || ||| |||||| || || || || || Sbjct 18441492 AATTCCTTCTTTTTCTTGAATCTTAGCTTT---AATAGCATCAATAGAGTCATTTGGTTC 18441436 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || || || || || | ||| || ||||| |||||||| Sbjct 18441435 GACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || ||||| || || ||||||||||| |||||||| | Sbjct 3528318 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC-TGA 3528376 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | || || ||||||||||||||||| || | | ||| || || | || Sbjct 3528377 AAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 3528436 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| || || || | | ||| || ||| || || || Sbjct 3528437 AATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGAC 3528496 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 3528497 TTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777595676148