Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=19924566 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 19981 tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||||| ||| || || || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 4820746 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 4820805 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | || || ||||| ||||||||||| ||| ||||||| || |||||||| || Sbjct 4820806 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 4820865 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCC 20158 | |||||||| || ||| || ||| | | || ||| |||||| ||||| Sbjct 4820866 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAA--TAGCATCAATAGAATCATTTGGTTCA 4820923 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| | ||||| || || || || | || || ||||| ||||||||||| Sbjct 4820924 ACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 19981 tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||||| ||| || || || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 17036777 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 17036718 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | || || ||||| ||||||||||| ||| ||||||| || |||||||| || Sbjct 17036717 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 17036658 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCC 20158 | |||||||| || ||| || ||| | | || ||| |||||| ||||| Sbjct 17036657 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAA--TAGCATCAATAGAATCATTTGGTTCA 17036600 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| | ||||| || || || || | || || ||||| ||||||||||| Sbjct 17036599 ACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 113 bits (124), Expect = 4e-20 Identities = 198/283 (70%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 19931 TGtttaatttaat-aaattttattataaaatttaaatatattttatcattttCCTCCTCG 19989 ||||||||| || ||| | | | || |||| ||| ||||||| || ||||||| Sbjct 18441659 TGTTTAATTCAAACAAAAATAAAAAGAATATTTTAAT-TATTTTAATAT---CCTCCTCT 18441604 Query 19990 TAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTT 20049 ||| || || || ||||| ||||| ||||||||||| ||||| ||||| | ||| || Sbjct 18441603 TAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTT 18441544 Query 20050 AGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTC 20109 ||||| |||||||| || ||| ||||||| || |||||||| || | ||||| Sbjct 18441543 TCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTC 18441484 Query 20110 TTTGTCGGCAATTTTTTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCCGTTTCCACG 20167 ||| || ||| || ||| | | || ||| ||| || ||||| ||| | Sbjct 18441483 TTTTTCTTGAATCTTAGCTTTAA--TAGCATCAATAGAGTCATTTGGTTCGACTTCTAAT 18441426 Query 20168 GTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTT 20210 || || || || || || | ||||| ||||| |||||||||| Sbjct 18441425 GTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTT 18441383 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 19981 tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||||| ||| || || || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 3528317 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 3528376 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | |||||| ||||| |||||||| || ||| ||||||| || |||||||| || Sbjct 3528377 AAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 3528436 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCC 20158 | |||||||| || || || || | | || ||| |||||| ||||| Sbjct 3528437 AATTCCTTCTTTTTCTTGGATCTTAGCCTTAA--TAGCATCAATAGAATCATTTGGTTCG 3528494 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || ||||| || || | || || ||||| |||||||| Sbjct 3528495 ACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 104 bits (114), Expect = 2e-17 Identities = 186/266 (70%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 19949 ttattataa--aat--ttaaatatattttatcattttCCTCCTCGTAACCTCAACACCAA 20004 ||||||||| ||| || ||| ||||||| || ||||||| ||| || || || || Sbjct 12568430 TTATTATAATGAATAGTTCAAT-TATTTTAATAT---CCTCCTCTTAATCTTAAGACTAA 12568375 Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| ||||| ||||||||||| ||||| ||||| | ||| || ||||| ||||| Sbjct 12568374 ATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTG 12568315 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| ||||||| || |||||||| || | |||||||| || || || Sbjct 12568314 TTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTT 12568255 Query 20125 TTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCG 20182 || | | || ||| |||||| ||||| ||| | || || ||||| || Sbjct 12568254 AGCCTTAA--TAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCA 12568197 Query 20183 GTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| |||||||| Sbjct 12568196 GTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 104 bits (114), Expect = 2e-17 Identities = 186/266 (70%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 19949 ttattataa--aat--ttaaatatattttatcattttCCTCCTCGTAACCTCAACACCAA 20004 ||||||||| ||| || ||| ||||||| || ||||||| ||| || || || || Sbjct 12575316 TTATTATAATGAATAGTTCAAT-TATTTTAATAT---CCTCCTCTTAATCTTAAGACTAA 12575261 Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| ||||| ||||||||||| ||||| ||||| | ||| || ||||| ||||| Sbjct 12575260 ATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTG 12575201 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| ||||||| || |||||||| || | |||||||| || || || Sbjct 12575200 TTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTT 12575141 Query 20125 TTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCG 20182 || | | || ||| |||||| ||||| ||| | || || ||||| || Sbjct 12575140 AGCCTTAA--TAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCA 12575083 Query 20183 GTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| |||||||| Sbjct 12575082 GTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 104 bits (114), Expect = 2e-17 Identities = 186/266 (70%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 19949 ttattataa--aat--ttaaatatattttatcattttCCTCCTCGTAACCTCAACACCAA 20004 ||||||||| ||| || ||| ||||||| || ||||||| ||| || || || || Sbjct 16561127 TTATTATAATGAATAGTTCAAT-TATTTTAATAT---CCTCCTCTTAATCTTAAGACTAA 16561182 Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| ||||| ||||||||||| ||||| ||||| | ||| || ||||| ||||| Sbjct 16561183 ATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTG 16561242 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| ||||||| || |||||||| || | |||||||| || || || Sbjct 16561243 TTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTT 16561302 Query 20125 TTGTTTCACCTGGC--CAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCG 20182 || | | || ||| |||||| ||||| ||| | || || ||||| || Sbjct 16561303 AGCCTTAA--TAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCA 16561360 Query 20183 GTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| |||||||| Sbjct 16561361 GTGAGTGTCTTAACAAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419587194886281