Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 187 6e-42 >seq1 Length=19924566 Score = 187 bits (206), Expect = 6e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || | |||| ||| | ||| |||||||| ||||| ||||| || || Sbjct 4820746 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 4820805 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||||| |||||| || |||||||| || || ||||||||||| || Sbjct 4820806 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 4820865 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||||| || |||||||| ||||| | | || | | ||| | ||||| || Sbjct 4820866 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAAC 4820925 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| |||||||||||| ||||||||||| || ||||| || |||||||| Sbjct 4820926 TTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 187 bits (206), Expect = 6e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || | |||| ||| | ||| |||||||| ||||| ||||| || || Sbjct 17036777 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 17036718 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||||| |||||| || |||||||| || || ||||||||||| || Sbjct 17036717 AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGG 17036658 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||||| || |||||||| ||||| | | || | | ||| | ||||| || Sbjct 17036657 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAAC 17036598 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| |||||||||||| ||||||||||| || ||||| || |||||||| Sbjct 17036597 TTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || | |||| ||| | ||| |||||||| ||||| ||||| || || Sbjct 18441612 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 18441553 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||| | || ||||||| ||||||||| |||||||| || || |||||||| || || Sbjct 18441552 AAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 18441493 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||||| || |||||||| ||||| | | || | | || | ||||| || Sbjct 18441492 AATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGAC 18441433 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 |||| ||| |||||||| |||||||| ||||| ||||| || ||||||| Sbjct 18441432 TTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTT 18441383 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || | |||| ||| | ||| |||||||| ||||| ||||| || || Sbjct 3528317 TCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGA 3528376 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | || ||||||| ||||||||| |||||||| || || |||||||| || || Sbjct 3528377 AAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGG 3528436 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||||| || || ||||| || || | | || | | ||| | ||||| || Sbjct 3528437 AATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGAC 3528496 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||| ||||| || ||||| ||||| || |||||||| ||||| Sbjct 3528497 TTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 172 bits (190), Expect = 1e-37 Identities = 195/260 (75%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 104300 TATTATACTGAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGT 104359 ||||||| ||| | ||| || ||| ||| || ||||||| || | |||| ||| Sbjct 12568429 TATTATAATGAATAGTTCAATTATTTTAATAT-CCTCCTCTTAATCTTAAGACTAAATGA 12568371 Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 | ||| |||||||| ||||| ||||| || || ||||| | || ||||||| ||||||| Sbjct 12568370 AGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTT 12568311 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || || |||||||| || || ||||||||||| || || ||||| || Sbjct 12568310 CCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCC 12568251 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || | | || | | ||| | ||||| || |||| ||| ||||| || ||||| ||| Sbjct 12568250 TTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGT 12568191 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| Sbjct 12568190 GTCTTAACAAATATTTGCAT 12568171 Score = 172 bits (190), Expect = 1e-37 Identities = 195/260 (75%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 104300 TATTATACTGAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGT 104359 ||||||| ||| | ||| || ||| ||| || ||||||| || | |||| ||| Sbjct 12575315 TATTATAATGAATAGTTCAATTATTTTAATAT-CCTCCTCTTAATCTTAAGACTAAATGA 12575257 Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 | ||| |||||||| ||||| ||||| || || ||||| | || ||||||| ||||||| Sbjct 12575256 AGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTT 12575197 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || || |||||||| || || ||||||||||| || || ||||| || Sbjct 12575196 CCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCC 12575137 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || | | || | | ||| | ||||| || |||| ||| ||||| || ||||| ||| Sbjct 12575136 TTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGT 12575077 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| Sbjct 12575076 GTCTTAACAAATATTTGCAT 12575057 Score = 172 bits (190), Expect = 1e-37 Identities = 195/260 (75%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 104300 TATTATACTGAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGT 104359 ||||||| ||| | ||| || ||| ||| || ||||||| || | |||| ||| Sbjct 16561128 TATTATAATGAATAGTTCAATTATTTTAATAT-CCTCCTCTTAATCTTAAGACTAAATGA 16561186 Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 | ||| |||||||| ||||| ||||| || || ||||| | || ||||||| ||||||| Sbjct 16561187 AGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTT 16561246 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || || |||||||| || || ||||||||||| || || ||||| || Sbjct 16561247 CCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCC 16561306 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || | | || | | ||| | ||||| || |||| ||| ||||| || ||||| ||| Sbjct 16561307 TTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGT 16561366 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| Sbjct 16561367 GTCTTAACAAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398385247708