Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 >seq1 Length=19924566 Score = 223 bits (246), Expect = 4e-53 Identities = 478/706 (68%), Gaps = 20/706 (3%) Strand=Plus/Plus Query 164391 AAATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTT 164450 ||||| ||| |||| ||||||||| |||||||| || ||||||| | |||| | Sbjct 5272011 AAATTTTAATCCAGAAGGAATGGGAGTTGGTGGACTTGACAAAGAATTTACAGATATTCT 5272070 Query 164451 CAGACGAGCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTA 164509 ||| |||||||| ||| | | ||| | ||| |||| || ||||||||||| || Sbjct 5272071 AAGAAGAGCATTTATGTCTCG-TATGTTTCCATCAGAAACTATTAAAAAATTAGGTATTA 5272129 Query 164510 AACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTC 164569 ||||| | ||||||||||| ||| ||||||| || || || || ||||| |||||||| Sbjct 5272130 AACATGTTAAAGGAATTTTGTTATATGGACCACCAGGATGTGGAAAAACTTTAATGGCAA 5272189 Query 164570 GATGCATTGCTCAA--GCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCC-TGAAT 164626 || || | | || | ||| | | || || |||| | ||| | ||||| | || Sbjct 5272190 GACAAATAGGTAAAATGGTTTCATCTGTTGAACC--TAAATTAGTTGAAGGTCCATCCAT 5272247 Query 164627 TATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTG 164686 | || || |||||||| || ||||||||||||||| | ||||| || ||| ||||||| Sbjct 5272248 TCTT-AATAAATATGTCGGAGAGTCAGAAGCTAATATCAGAAACTTATTTGCAGAGGCTG 5272306 Query 164687 AAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 | | ||||| || || ||| | |||| || | || ||||| || ||||||| Sbjct 5272307 AGGCTGAACAGAATCAAAGAGGAGATGATAGTCAACTCCACATTATTATTCTTGATGAAT 5272366 Query 164747 TAGATGCTCTTTGCAAAAAACGTG---GTGATAAT-ATTATTC--------ATGATGCAG 164794 |||||||| |||| ||| || | | || |||| ||| | | |||| | Sbjct 5272367 TAGATGCTATTTGTAAACAAAGAGGAAGTCGTAATGATTCTACTGGAGTATCTGATACTA 5272426 Query 164795 TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTG 164854 | || || || || | ||| || ||||| || | | |||||||||||| | || Sbjct 5272427 TTGTCAACCAATTATTAAGTAAGATTGATGGAGTTAATGCATTAAATAATATTCTTGTTA 5272486 Query 164855 TAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAG 164914 | || ||||| || || ||| | | || |||||||||||| |||| || || | | Sbjct 5272487 TTGGAATGACTAATAGAATGGATATGTTAGACGATGCTTTATTAAGACCAGGAAGACTTG 5272546 Query 164915 AATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTC 164974 || | |||| ||||| ||| |||| || || | || | ||||||||||||| ||| Sbjct 5272547 AAGTTCAAATTGAAATTGGACTACCAGATGAACATGGTAGAGTTCAAATTTTAAATATTC 5272606 Query 164975 ATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAG 165034 | ||||||| | | |||| ||| | | |||| | | | || ||| Sbjct 5272607 ACACAAAAAAAATGAGAGAAAATCATATGTTAGATTCTAATGTTTCTATTGAAGAATTAG 5272666 Query 165035 CTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGT 165080 || |||| || || | | |||||||||||| || |||||||| Sbjct 5272667 CTAAACAAACAAAGAACTTTTCTGGTGCTGAATTGGAAGGATTAGT 5272712 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| ||| |||||||| |||| | |||||||||||||| ||||| | || || Sbjct 1821406 CAAAAAGGAACAGTTGGTATGACTTATAGACAAGAAGATATGCCATTTACAATTGAAGGA 1821465 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || | ||||| |||||||||||| ||||| ||| ||||| Sbjct 1821466 ATTTCACCAGACATCATTATGAACCCACATGCTATTCCATCTCGTATGAC 1821515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871992551600