Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 >seq1 Length=19924566 Score = 136 bits (150), Expect = 4e-27 Identities = 178/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 94764 TTTTAAA-ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822 |||||| |||||| ||||||||| |||| || || || || | || ||||| ||| Sbjct 18441629 TTTTAATTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTT 18441570 Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882 || | ||||||||| | ||| || || || | |||||||| |||| || | | Sbjct 18441569 TGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGT 18441510 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 ||||| |||||||| ||||| |||||||| || | ||| || || || | || | | | Sbjct 18441509 CTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATA 18441450 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 | |||| | ||||| || | ||||| || ||||||||||||||||| |||||||| Sbjct 18441449 GAGTCATTTGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATT 18441390 Query 95003 TGCAT 95007 ||||| Sbjct 18441389 TGCAT 18441385 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94771 ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTT 94830 |||||| ||||||||| |||| || || || || | || ||||| ||||| | ||| Sbjct 3528308 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 3528367 Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| | ||| || || || | |||||||| |||| || | |||||| || Sbjct 3528368 ATAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 3528427 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| |||||||| || | || || ||||| | || | | || ||| Sbjct 3528428 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 3528487 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| ||||||||||| || || || ||||| || ||||| Sbjct 3528488 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94771 ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTT 94830 |||||| ||||||||| |||| || || || || | || ||||| ||||| | ||| Sbjct 12568407 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 12568348 Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| | ||| || || || | |||||||| |||| || | |||||| || Sbjct 12568347 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 12568288 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| |||||||| || | || || ||||| | || | | || ||| Sbjct 12568287 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 12568228 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| ||||||||||| || || || ||||| || ||||| Sbjct 12568227 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94771 ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTT 94830 |||||| ||||||||| |||| || || || || | || ||||| ||||| | ||| Sbjct 12575293 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 12575234 Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| | ||| || || || | |||||||| |||| || | |||||| || Sbjct 12575233 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 12575174 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| |||||||| || | || || ||||| | || | | || ||| Sbjct 12575173 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 12575114 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| ||||||||||| || || || ||||| || ||||| Sbjct 12575113 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94771 ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTT 94830 |||||| ||||||||| |||| || || || || | || ||||| ||||| | ||| Sbjct 16561150 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 16561209 Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| | ||| || || || | |||||||| |||| || | |||||| || Sbjct 16561210 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 16561269 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| |||||||| || | || || ||||| | || | | || ||| Sbjct 16561270 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 16561329 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| ||||||||||| || || || ||||| || ||||| Sbjct 16561330 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Score = 100 bits (110), Expect = 3e-16 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||||| ||||||||| |||| || || || || | || ||||| ||||| | |||| Sbjct 4820738 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 4820797 Query 94832 TAATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 ||||| | | ||||| | || || | ||||| || |||| || | |||||| | Sbjct 4820798 TAATC--TGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTT 4820855 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 |||| || ||||| |||||||| || | ||| || || || | || | | || ||| Sbjct 4820856 GATCAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCAT 4820915 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || ||||||||||| || || |||||||| ||||| Sbjct 4820916 TTGGTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 4820973 Score = 100 bits (110), Expect = 3e-16 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||||| ||||||||| |||| || || || || | || ||||| ||||| | |||| Sbjct 17036785 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 17036726 Query 94832 TAATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 ||||| | | ||||| | || || | ||||| || |||| || | |||||| | Sbjct 17036725 TAATC--TGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTT 17036668 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 |||| || ||||| |||||||| || | ||| || || || | || | | || ||| Sbjct 17036667 GATCAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCAT 17036608 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || ||||||||||| || || |||||||| ||||| Sbjct 17036607 TTGGTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 17036550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291194396360