Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 >seq1 Length=19924566 Score = 100 bits (110), Expect = 3e-16 Identities = 202/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 65584 GATGTTATTGGTATAGATGAGGGACAGTTTTTTCCAGATATTGTTAATTTTTCGGAATCT 65643 || ||||||||||| ||||| || ||||| || ||||| | | | ||||| || | Sbjct 4694617 GAAGTTATTGGTATTGATGAAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAGGC- 4694559 Query 65644 ATG-GCAAATATTGGTAAAATTGTTATTATCGCCGCCTTAGACGGTACTTATAAAAGAAG 65702 ||| |||| | ||| | | | || || || || || ||||| ||||| | |||||| Sbjct 4694558 ATGTGCAAGTTATGGAAGATTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAAA 4694499 Query 65703 TCCGTTTAATGATATTTTAC--AACTTATACCATTATCAGAGAAAGTTATAAAACTAAAT 65760 || ||| || | |||| | ||||| ||||||| || | || | ||| ||| | Sbjct 4694498 ACCATTTG--GACAAATTACTGATCTTATTCCATTATGTGAAAGCGTAAAAAAGTTAAGT 4694441 Query 65761 GCGGTATGTATGAATTGTTATGGAGACGCATCTTTTTCAAAAAGAATTAGTGACGAAAAA 65820 || || ||| | |||||| | | | ||| |||||||| ||||| ||| ||| || Sbjct 4694440 GCTGTTTGTGTTAATTGTGGTAAAAAAGCAGCTTTTTCATTAAGAACCAGTTCAGAAGAA 4694381 Query 65821 GAAATAGAGATTATAGGAGGAAGTGAAAAATATAAATCCGTATGTAGAAAATGTT 65875 ||| || |||| |||||| || |||||| | || ||||||||||||| Sbjct 4694380 TCAATTGAAGTTATTGGAGGAGTAGATAAATATTGTGCTGTCTGTAGAAAATGTT 4694326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900793351240