Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 6e-13 >seq1 Length=19924566 Score = 89.7 bits (98), Expect = 6e-13 Identities = 278/419 (66%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 80738 TATTCAGTTGATAATCGGCCCCATGTTTTCAGGTAAAAGTACAGAATTAATTAGACGAGT 80797 |||||| || || || || || |||||| ||||||| ||| |||||||| |||| | Sbjct 4694837 TATTCAATTAATTATTGGTCCTATGTTTAGTGGTAAAACTACTGAATTAATAAGACTTAT 4694778 Query 80798 TAGACGTTATCAAATAGCTCAATATAAATGC-GTGACTATAAAATATTCTAACGATAATA 80856 || | | | | | ||| ||| | || | | || ||| ||||| ||||| |||| || Sbjct 4694777 TAAAAGGTTT-AGATATTCCAAAAAAACTACTGTTGTTATTAAATACTCTAAGGATACTA 4694719 Query 80857 GATACGGAACGGGACTATGGA-------CGCATGATAA-GAATAATTTTGAAGC-ATTGG 80907 | || ||| ||| | ||| | | |||||||| |||| || |||| ||| Sbjct 4694718 GGTATGGATCGGAAG-ATGAAGCTATTTCTCATGATAAAGAATCATGGA-AAGCTATTCC 4694661 Query 80908 AAGCAACTAAACTATGTGATGTCTTGGAATCAATTACAGATTTCTCCGTGATAGGTATCG 80967 || || || ||| | |||| || | | | ||| || || ||||| | Sbjct 4694660 AACCATGAAATTAATGCCAGTACTTGAAACCGCTCTTA-ATTATGAAGTTATTGGTATTG 4694602 Query 80968 ATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG-GCAAACGAAGGA 81026 ||||||| |||||||| |||||| | | || || | ||| | ||| |||| | ||| Sbjct 4694601 ATGAAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAG-GCATGTGCAAGTTATGGA 4694543 Query 81027 AAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATT 81086 | | | || || |||| ||| | ||||| ||||| ||| | ||||| ||| | ||| Sbjct 4694542 AGATTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAAAACCATTTGGACAAATT 4694483 Query 81087 TTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATG 81145 ||||||||||||||| ||||| || ||| ||| |||||| ||| | || || Sbjct 4694482 ACTGATCTTATTCCATTATGTGAAAGCGTAAAAAAGTTAAGTGCTGTTTGTGTTAATTG 4694424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947192213160