Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 >seq1 Length=19924566 Score = 125 bits (138), Expect = 7e-24 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | ||||| || ||| | |||||||| | || || | ||| | ||| || Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 26826 AACGACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || | || || || | | || | || |||| || |||||||| || || || || Sbjct 4820916 AATGATTCTATTGATGCTATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCTGA 4820858 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG-ATGATAGAAAC-GTCAGCGAC 26942 |||||||||||| |||| | ||||||||| | |||| | || ||| || ||| || Sbjct 4820857 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCA--GAT 4820800 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 4820799 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 4820746 Score = 125 bits (138), Expect = 7e-24 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | ||||| || ||| | |||||||| | || || | ||| | ||| || Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 26826 AACGACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || | || || || | | || | || |||| || |||||||| || || || || Sbjct 17036607 AATGATTCTATTGATGCTATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCTGA 17036665 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG-ATGATAGAAAC-GTCAGCGAC 26942 |||||||||||| |||| | ||||||||| | |||| | || ||| || ||| || Sbjct 17036666 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCA--GAT 17036723 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 17036724 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 17036777 Score = 123 bits (136), Expect = 2e-23 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26767 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAA 26826 |||||||| | ||||| ||||| | |||||||| | ||||| | ||| | ||| ||| Sbjct 18441383 AAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAA 18441442 Query 26827 ACGACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||| | || || || | | || | || |||| || |||||||| || || || ||| Sbjct 18441443 ATGACTCTATTGATGCTATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCAGAT 18441501 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG-ATGATAGAAAC-GTCAGCGACT 26943 ||||||||||| |||| | || |||||| | |||| | || ||| | ||| || | Sbjct 18441502 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA--GATT 18441559 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 18441560 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 18441612 Score = 111 bits (122), Expect = 2e-19 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | ||||||||| | ||||| | ||| | ||| |||| Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 26829 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 3528426 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACG---TCAGCGACTA 26944 ||||||||| |||| | || |||||| | ||||| | | |||| |||| | || Sbjct 3528425 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAA-AAACTCTTTCAG--ATTA 3528369 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 3528368 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 3528317 Score = 111 bits (122), Expect = 2e-19 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | ||||||||| | ||||| | ||| | ||| |||| Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 26829 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 12568289 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAG-ATGATAGAAAC-GTCAGCGACTAT 26945 ||||||||| |||| | || |||||| | |||| | || ||| | ||| || ||| Sbjct 12568290 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA--GATTAT 12568347 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 12568348 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12568398 Score = 111 bits (122), Expect = 2e-19 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | ||||||||| | ||||| | ||| | ||| |||| Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 26829 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 12575175 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAG-ATGATAGAAAC-GTCAGCGACTAT 26945 ||||||||| |||| | || |||||| | |||| | || ||| | ||| || ||| Sbjct 12575176 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA--GATTAT 12575233 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 12575234 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12575284 Score = 111 bits (122), Expect = 2e-19 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | ||||||||| | ||||| | ||| | ||| |||| Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 26829 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 16561268 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAACGT-CAGCGACTAT 26945 ||||||||| |||| | || |||||| | ||||| | | ||| | | ||| | ||| Sbjct 16561267 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 16561210 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||||||||||||||| || | ||| | ||| | ||| | ||||||||| Sbjct 16561209 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 16561159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662394016720