Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 149 5e-31 >seq1 Length=19924566 Score = 149 bits (164), Expect = 5e-31 Identities = 177/234 (76%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| || ||| | |||||||| | ||||| | ||||| || | Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 24048 AACGACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || | || || || | | || | || |||| || |||||||| || || || || Sbjct 4820916 AATGATTCTATTGATGCTATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCTGA 4820858 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGAT 24164 |||||| ||||| |||| | ||||| ||| | ||||| | | ||| || | ||| || Sbjct 4820857 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAG--AT 4820800 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 4820799 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 4820746 Score = 149 bits (164), Expect = 5e-31 Identities = 177/234 (76%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| || ||| | |||||||| | ||||| | ||||| || | Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 24048 AACGACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || | || || || | | || | || |||| || |||||||| || || || || Sbjct 17036607 AATGATTCTATTGATGCTATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCTGA 17036665 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGAT 24164 |||||| ||||| |||| | ||||| ||| | ||||| | | ||| || | ||| || Sbjct 17036666 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAG--AT 17036723 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 17036724 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 17036777 Score = 141 bits (156), Expect = 8e-29 Identities = 175/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 23989 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||||| | ||||| ||||| | |||||||| | || || | |||||||| | | Sbjct 18441383 AAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAA 18441442 Query 24049 ACGACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||| | || || || | | || | || |||| || |||||||| || || || ||| Sbjct 18441443 ATGACTCTATTGATGCTATTAAAGCTAA-GATTCAAGAAAAAGAAGGAATTCCACCAGAT 18441501 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATT 24165 ||||| ||||| |||| | || || ||| | ||||| | | ||| | | ||| ||| Sbjct 18441502 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATT 18441559 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 18441560 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 18441612 Score = 129 bits (142), Expect = 5e-25 Identities = 171/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | ||||||||| | || || | |||||||| | || Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 24051 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 3528426 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACG---TCAGCGATTA 24166 ||| ||||| |||| | || || ||| | ||||| | | |||| |||| |||| Sbjct 3528425 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAA-AAACTCTTTCAG--ATTA 3528369 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 3528368 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 3528317 Score = 129 bits (142), Expect = 5e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | ||||||||| | || || | |||||||| | || Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 24051 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 12568289 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTAT 24167 ||| ||||| |||| | || || ||| | ||||| | | ||| | | ||| ||||| Sbjct 12568290 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 12568347 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 12568348 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12568398 Score = 129 bits (142), Expect = 5e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | ||||||||| | || || | |||||||| | || Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 24051 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 12575175 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTAT 24167 ||| ||||| |||| | || || ||| | ||||| | | ||| | | ||| ||||| Sbjct 12575176 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 12575233 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 12575234 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12575284 Score = 129 bits (142), Expect = 5e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | ||||||||| | || || | |||||||| | || Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 24051 GACACCATCGA-GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || || || | | | | || ||| || |||||||| || || || ||||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAA-GATCCAAGAAAAAGAAGGAATTCCACCAGATCA 16561268 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTAT 24167 ||| ||||| |||| | || || ||| | ||||| | | ||| | | ||| ||||| Sbjct 16561267 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAG--ATTAT 16561210 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 16561209 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 16561159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935994760155