Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=19924566 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| ||||| || || || || ||||| || ||||| | ||| || | Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 115343 AGCGACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | || || ||| | | |||| | || | || || |||||||| | || ||| Sbjct 4820916 AATGATTCTATTGATGCTATTAAAGCTAAGA-TTCAAGAAAAAGAAGGAATTCCACCTGA 4820858 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||||||||||||| ||| ||||||||||||||||| | || || | | ||||| Sbjct 4820857 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTA 4820798 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||||||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 4820797 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 4820746 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| ||||| || || || || ||||| || ||||| | ||| || | Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 115343 AGCGACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | || || ||| | | |||| | || | || || |||||||| | || ||| Sbjct 17036607 AATGATTCTATTGATGCTATTAAAGCTAAGA-TTCAAGAAAAAGAAGGAATTCCACCTGA 17036665 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||||||||||||| ||| ||||||||||||||||| | || || | | ||||| Sbjct 17036666 TCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTA 17036725 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||||||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 17036726 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 17036777 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115284 AAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCA 115343 |||||||||| ||||| ||||| || || ||||| || || || | ||| || | | Sbjct 18441383 AAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAA 18441442 Query 115344 GCGACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || ||| | | |||| | || | || || |||||||| | || ||| Sbjct 18441443 ATGACTCTATTGATGCTATTAAAGCTAAGA-TTCAAGAAAAAGAAGGAATTCCACCAGAT 18441501 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||||||||||||| ||| || |||||||||||||| | || || | | |||||| Sbjct 18441502 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTAT 18441561 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 18441562 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 18441612 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| |||||||| || || | ||| || | | Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 115346 GACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | ||| | || | | || |||||||| | || ||||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 3528426 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||||| ||| || |||||||||||||| | ||||| | | |||||||| Sbjct 3528425 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAA 3528366 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 3528365 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 3528317 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| |||||||| || || | ||| || | | Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 115346 GACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | ||| | || | | || |||||||| | || ||||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 12568289 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||||| ||| || |||||||||||||| | || || | | |||||||| Sbjct 12568290 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 12568349 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 12568350 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12568398 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| |||||||| || || | ||| || | | Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 115346 GACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | ||| | || | | || |||||||| | || ||||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 12575175 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||||| ||| || |||||||||||||| | || || | | |||||||| Sbjct 12575176 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 12575235 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 12575236 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 12575284 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| |||||||| || || | ||| || | | Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 115346 GACACTGTTGGA-CAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | ||| | || | | || |||||||| | || ||||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATCA 16561268 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||||| ||| || |||||||||||||| | || || | | |||||||| Sbjct 16561267 ACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAA 16561208 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||| || || | ||| | || || ||||| |||||||| Sbjct 16561207 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 16561159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343994816120