Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 >seq1 Length=19924566 Score = 100 bits (110), Expect = 4e-16 Identities = 284/423 (67%), Gaps = 24/423 (6%) Strand=Plus/Minus Query 80567 TATTCAGTTGATAATCGGCCCCATGTTTTCAGGTAAAAGTACAGAATTAATTAGACGAGT 80626 |||||| || || || || || |||||| ||||||| ||| |||||||| |||| | Sbjct 4694837 TATTCAATTAATTATTGGTCCTATGTTTAGTGGTAAAACTACTGAATTAATAAGACTTAT 4694778 Query 80627 TACACGTTATCAAATAGCTCAATATAAATGC-GTGACTATAAAATATTCTAACGATAATA 80685 || | | | | | ||| ||| | || | | || ||| ||||| ||||| |||| || Sbjct 4694777 TAAAAGGTTT-AGATATTCCAAAAAAACTACTGTTGTTATTAAATACTCTAAGGATACTA 4694719 Query 80686 GATACGGAACGGGACTATGGA-------CACATGATAA-GAATAATTTTGAAGC-ATTGG 80736 | || ||| ||| | ||| | | |||||||| |||| || |||| ||| Sbjct 4694718 GGTATGGATCGGAAG-ATGAAGCTATTTCTCATGATAAAGAATCATGGA-AAGCTATTCC 4694661 Query 80737 AAGCAACTAAACTATGTGATGTCTTGGAA--GCAATTACAGATTTCTCCGTGATAGGTAT 80794 || || || ||| | |||| || || ||| ||| || || ||||| Sbjct 4694660 AACCATGAAATTAATGCCAGTACTTGAAACCGCTCTTA---ATTATGAAGTTATTGGTAT 4694604 Query 80795 TGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG-GCAAACGAAG 80853 ||||||||| |||||||| |||||| | | || || | ||| | ||| |||| | | Sbjct 4694603 TGATGAAGGTCAGTTCTTCCCAGACTTAATAGAGTTTTCAGAG-GCATGTGCAAGTTATG 4694545 Query 80854 GAAAAATAGTTATAGTAGCCGCACTCGATGGTACATTTCAACGTAAACCGTTT--AATAA 80911 ||| | | || || |||| ||| | ||||||||||| ||| | ||||| ||| | || Sbjct 4694544 GAAGATTGGTAATCATAGCAGCATTAGATGGTACATTCCAAAGAAAACCATTTGGACAAA 4694485 Query 80912 TATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAA 80971 | || |||||||||||||||| ||||| || ||| ||| ||| || ||| | || Sbjct 4694484 TTACT--GATCTTATTCCATTATGTGAAAGCGTAAAAAAGTTAAGTGCTGTTTGTGTTAA 4694427 Query 80972 ATG 80974 || Sbjct 4694426 TTG 4694424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631992079600