Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 149 5e-31 >seq1 Length=19924566 Score = 149 bits (164), Expect = 5e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||| |||| |||||||||||||| ||||| | || || ||| | |||||| | ||||| Sbjct 3528553 AACAGAACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTC 3528494 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 || | ||| |||| || | | ||| || ||| || |||||||| |||||| Sbjct 3528493 GAACCAAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCA 3528434 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || ||||| | |||||||||| || |||||||||||||| | ||| | Sbjct 3528433 CCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCA 3528374 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || |||||||||||||| || || |||||||| |||| ||||||||||| || Sbjct 3528373 GATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATAT 3528314 Query 25230 TA 25231 || Sbjct 3528313 TA 3528312 Score = 149 bits (164), Expect = 5e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||| |||| |||||||||||||| ||||| | || || ||| | |||||| | ||||| Sbjct 12568162 AACAGAACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTC 12568221 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 || | ||| |||| || | | ||| || ||| || |||||||| |||||| Sbjct 12568222 GAACCAAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCA 12568281 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || ||||| | |||||||||| || |||||||||||||| | ||| | Sbjct 12568282 CCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA 12568341 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || |||||||||||||| || || |||||||| |||| ||||||||||| || Sbjct 12568342 GATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATAT 12568401 Query 25230 TA 25231 || Sbjct 12568402 TA 12568403 Score = 149 bits (164), Expect = 5e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||| |||| |||||||||||||| ||||| | || || ||| | |||||| | ||||| Sbjct 12575048 AACAGAACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTC 12575107 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 || | ||| |||| || | | ||| || ||| || |||||||| |||||| Sbjct 12575108 GAACCAAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCA 12575167 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || ||||| | |||||||||| || |||||||||||||| | ||| | Sbjct 12575168 CCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA 12575227 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || |||||||||||||| || || |||||||| |||| ||||||||||| || Sbjct 12575228 GATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATAT 12575287 Query 25230 TA 25231 || Sbjct 12575288 TA 12575289 Score = 149 bits (164), Expect = 5e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||| |||| |||||||||||||| ||||| | || || ||| | |||||| | ||||| Sbjct 16561395 AACAGAACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTC 16561336 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 || | ||| |||| || | | ||| || ||| || |||||||| |||||| Sbjct 16561335 GAACCAAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCA 16561276 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || ||||| | |||||||||| || |||||||||||||| | ||| | Sbjct 16561275 CCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCA 16561216 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || |||||||||||||| || || |||||||| |||| ||||||||||| || Sbjct 16561215 GATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATAT 16561156 Query 25230 TA 25231 || Sbjct 16561155 TA 16561154 Score = 143 bits (158), Expect = 2e-29 Identities = 182/247 (74%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || | |||||| | ||||| || | Sbjct 18441384 AATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAA 18441443 Query 25058 TGACACTATCGAGTC-ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||| |||| || | | | |||| || | ||| || |||||||| |||||||| || | Sbjct 18441444 TGACTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACCAGATC 18441502 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | |||||||||| || |||||||||||||| | ||| | ||||| | Sbjct 18441503 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 18441562 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATA 25236 | |||||||||||||| || || |||||||| |||| ||||||||||| |||| ||| Sbjct 18441563 ACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAATA 18441622 Query 25237 CTATTAA 25243 ||||| Sbjct 18441623 --ATTAA 18441627 Score = 140 bits (154), Expect = 3e-28 Identities = 176/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || || | || ||| | ||||| || | Sbjct 4820974 AATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAA 4820915 Query 25058 TGACACTATCGAGTC-ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| |||| || | | | |||| || | ||| || |||||||| ||||||||||| | Sbjct 4820914 TGATTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACCTGATC 4820856 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG--ATCGCACTGTGGGCGATTA 25174 |||| | |||||||||| ||||||||||||||||| | | |||| | ||||| Sbjct 4820855 AACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTT--CAGATTA 4820798 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || |||||||||||||| || || |||||||| |||| ||||||||||| |||| Sbjct 4820797 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTA 4820741 Score = 140 bits (154), Expect = 3e-28 Identities = 176/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || || | || ||| | ||||| || | Sbjct 17036549 AATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAA 17036608 Query 25058 TGACACTATCGAGTC-ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| |||| || | | | |||| || | ||| || |||||||| ||||||||||| | Sbjct 17036609 TGATTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACCTGATC 17036667 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG--ATCGCACTGTGGGCGATTA 25174 |||| | |||||||||| ||||||||||||||||| | | |||| | ||||| Sbjct 17036668 AACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTT--CAGATTA 17036725 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || |||||||||||||| || || |||||||| |||| ||||||||||| |||| Sbjct 17036726 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTA 17036782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327994718815