Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=19924566 Score = 120 bits (132), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| ||||| || || | || || || || ||||| | ||| ||||| Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 111244 AGCGATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111301 | |||||| ||| || | |||| | || | || || |||||||| |||| | Sbjct 4820916 AATGATTCTATTGATGCTAT-TAAAGCTAAGA-TTCAAGAAAAAGAAGGAATTCCACCTG 4820859 Query 111302 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111361 |||||||||| ||||||| ||| ||||||||||| ||||| || || | | |||| Sbjct 4820858 ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATT 4820799 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 |||| || ||||||||||| ||||| |||||||| || Sbjct 4820798 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTT 4820762 Score = 120 bits (132), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| ||||| || || | || || || || ||||| | ||| ||||| Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 111244 AGCGATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111301 | |||||| ||| || | |||| | || | || || |||||||| |||| | Sbjct 17036607 AATGATTCTATTGATGCTAT-TAAAGCTAAGA-TTCAAGAAAAAGAAGGAATTCCACCTG 17036664 Query 111302 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111361 |||||||||| ||||||| ||| ||||||||||| ||||| || || | | |||| Sbjct 17036665 ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATT 17036724 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 |||| || ||||||||||| ||||| |||||||| || Sbjct 17036725 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTT 17036761 Score = 114 bits (126), Expect = 1e-20 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 111185 AAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCA 111244 |||||||||| ||||| ||||| | || || || || || || | ||| ||||| | Sbjct 18441383 AAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAA 18441442 Query 111245 GCGATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 || ||| ||| || | |||| | || | || || |||||||| |||| || Sbjct 18441443 ATGACTCTATTGATGCTAT-TAAAGCTAAGA-TTCAAGAAAAAGAAGGAATTCCACCAGA 18441500 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||||||||| ||||||| ||| || |||||||| ||||| || ||| | | ||||| Sbjct 18441501 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTA 18441560 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||| || ||||||||||| ||||| |||||||| || Sbjct 18441561 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTT 18441596 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || ||||| || || | ||| ||||| | Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 111247 GATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 |||||| ||| || | ||| | || | | || |||||||| |||| |||| Sbjct 3528484 GATTCTATTGATGCTAT-TAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATC 3528427 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 ||||||| ||||||| ||| || |||||||| ||||| |||||| | | ||||||| Sbjct 3528426 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATA 3528367 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 | || ||||||||||| ||||| |||||||| || Sbjct 3528366 ACATTCAAAAAGAATCAACACTTCATTTAGTCTT 3528333 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || ||||| || || | ||| ||||| | Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 111247 GATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 |||||| ||| || | ||| | || | | || |||||||| |||| |||| Sbjct 12568231 GATTCTATTGATGCTAT-TAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATC 12568288 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 ||||||| ||||||| ||| || |||||||| ||||| || ||| | | ||||||| Sbjct 12568289 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 12568348 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 | || ||||||||||| ||||| |||||||| || Sbjct 12568349 ACATTCAAAAAGAATCAACACTTCATTTAGTCTT 12568382 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || ||||| || || | ||| ||||| | Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 111247 GATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 |||||| ||| || | ||| | || | | || |||||||| |||| |||| Sbjct 12575117 GATTCTATTGATGCTAT-TAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATC 12575174 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 ||||||| ||||||| ||| || |||||||| ||||| || ||| | | ||||||| Sbjct 12575175 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 12575234 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 | || ||||||||||| ||||| |||||||| || Sbjct 12575235 ACATTCAAAAAGAATCAACACTTCATTTAGTCTT 12575268 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || ||||| || || | ||| ||||| | Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 111247 GATTCTGTTG--GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 |||||| ||| || | ||| | || | | || |||||||| |||| |||| Sbjct 16561326 GATTCTATTGATGCTAT-TAAGGCTAAGA-TCCAAGAAAAAGAAGGAATTCCACCAGATC 16561269 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 ||||||| ||||||| ||| || |||||||| ||||| || ||| | | ||||||| Sbjct 16561268 AACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATA 16561209 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 | || ||||||||||| ||||| |||||||| || Sbjct 16561208 ACATTCAAAAAGAATCAACACTTCATTTAGTCTT 16561175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039994844200