Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 >seq1 Length=19924566 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || || || || |||| | ||||| ||| | | Sbjct 18441385 ATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAAT 18441444 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | ||| ||| || |||||||| || || || |||||||| |||||| Sbjct 18441445 GACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCAA 18441504 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || ||||| ||||| || || | || ||||| ||| Sbjct 18441505 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 18441564 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||||||||| || | |||||||| || |||| | ||||| Sbjct 18441565 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 18441611 Score = 129 bits (142), Expect = 5e-25 Identities = 191/270 (71%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || ||||||||| |||||||| || | || || ||||| |||| | ||||| ||| | Sbjct 3528548 AACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACC 3528489 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||| | | || | ||| || || || ||||| || || || |||||||| || Sbjct 3528488 AAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGA 3528429 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | ||||| ||||| || ||||| ||||| || || | || ||||| Sbjct 3528428 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTA 3528369 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATT 22454 ||||||||||||||||| || | |||||||| || |||| | ||||| || Sbjct 3528368 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG------ATA 3528315 Query 22455 TTAAAATTATATTA-TATACATTAAAGTAT 22483 ||||||| || | ||| ||||||| ||| Sbjct 3528314 TTAAAATAATTGAACTATTCATTAAATTAT 3528285 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| |||||||| || | || || || || | || | ||||| ||| Sbjct 4820979 GTGAAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAA 4820920 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | ||| | | || | ||| ||| || |||||||| || || || |||||||| Sbjct 4820919 CCAAATGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCT 4820860 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||||||| | ||||| ||||| |||||||| ||||| || || | || ||| Sbjct 4820859 GATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGAT 4820800 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||||||||| || | |||||||| || |||| | ||||| Sbjct 4820799 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 4820747 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| |||||||| || | || || || || | || | ||||| ||| Sbjct 17036544 GTGAAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAA 17036603 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | ||| | | || | ||| ||| || |||||||| || || || |||||||| Sbjct 17036604 CCAAATGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCT 17036663 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||||||| | ||||| ||||| |||||||| ||||| || || | || ||| Sbjct 17036664 GATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGAT 17036723 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||||||||| || | |||||||| || |||| | ||||| Sbjct 17036724 TATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 17036776 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || ||||||||| |||||||| || | || || ||||| |||| | ||||| ||| | Sbjct 12568167 AACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACC 12568226 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||| | | || | ||| || || || ||||| || || || |||||||| || Sbjct 12568227 AAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGA 12568286 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | ||||| ||||| || ||||| ||||| || || | || ||||| Sbjct 12568287 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTA 12568346 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| || | |||||||| || |||| | ||||| Sbjct 12568347 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 12568397 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || ||||||||| |||||||| || | || || ||||| |||| | ||||| ||| | Sbjct 12575053 AACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACC 12575112 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||| | | || | ||| || || || ||||| || || || |||||||| || Sbjct 12575113 AAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGA 12575172 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | ||||| ||||| || ||||| ||||| || || | || ||||| Sbjct 12575173 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTA 12575232 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| || | |||||||| || |||| | ||||| Sbjct 12575233 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 12575283 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || ||||||||| |||||||| || | || || ||||| |||| | ||||| ||| | Sbjct 16561390 AACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACC 16561331 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||| | | || | ||| || || || ||||| || || || |||||||| || Sbjct 16561330 AAATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGA 16561271 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | ||||| ||||| || ||||| ||||| || || | || ||||| Sbjct 16561270 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTA 16561211 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| || | |||||||| || |||| | ||||| Sbjct 16561210 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 16561160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727994884565