Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 >seq1 Length=19924566 Score = 172 bits (190), Expect = 1e-37 Identities = 187/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||||||| |||||| | | | || || || || || || || |||||||| ||||| Sbjct 12568407 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 12568348 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 |||||| || || ||| | || |||||||| || || || || || || ||||||||||| Sbjct 12568347 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 12568288 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 || |||||||| ||||| || ||||| ||||| ||||| | || || || | || Sbjct 12568287 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 12568228 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || ||| ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| | Sbjct 12568227 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGT 12568168 Query 68465 GCTATTAT 68472 || |||| Sbjct 12568167 TCTGTTAT 12568160 Score = 172 bits (190), Expect = 1e-37 Identities = 187/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||||||| |||||| | | | || || || || || || || |||||||| ||||| Sbjct 12575293 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 12575234 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 |||||| || || ||| | || |||||||| || || || || || || ||||||||||| Sbjct 12575233 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 12575174 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 || |||||||| ||||| || ||||| ||||| ||||| | || || || | || Sbjct 12575173 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 12575114 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || ||| ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| | Sbjct 12575113 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGT 12575054 Query 68465 GCTATTAT 68472 || |||| Sbjct 12575053 TCTGTTAT 12575046 Score = 172 bits (190), Expect = 1e-37 Identities = 187/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||||||| |||||| | | | || || || || || || || |||||||| ||||| Sbjct 16561150 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 16561209 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 |||||| || || ||| | || |||||||| || || || || || || ||||||||||| Sbjct 16561210 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 16561269 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 || |||||||| ||||| || ||||| ||||| ||||| | || || || | || Sbjct 16561270 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 16561329 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || ||| ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| | Sbjct 16561330 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGT 16561389 Query 68465 GCTATTAT 68472 || |||| Sbjct 16561390 TCTGTTAT 16561397 Score = 168 bits (186), Expect = 1e-36 Identities = 186/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||||||| |||||| | | | || || || || || || || |||||||| ||||| Sbjct 3528308 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 3528367 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 |||||| || || || | || |||||||| || || || || || || ||||||||||| Sbjct 3528368 ATAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 3528427 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 || |||||||| ||||| || ||||| ||||| ||||| | || || || | || Sbjct 3528428 ATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATT 3528487 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || ||| ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| | Sbjct 3528488 TGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGT 3528547 Query 68465 GCTATTAT 68472 || |||| Sbjct 3528548 TCTGTTAT 3528555 Score = 159 bits (176), Expect = 6e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||||||| |||||| | | | || || || || || || || |||||||| ||||| Sbjct 18441621 ATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTT 18441562 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 |||||| || || ||| | || |||||||| || || || || || || ||||||||||| Sbjct 18441561 ATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTG 18441502 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 || |||||||| ||||| || ||||||||||| || || | || || || | ||| Sbjct 18441501 ATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATT 18441442 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||| ||||| || ||||| || ||||| || || || || || || || |||||| Sbjct 18441441 TGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATT 18441384 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||||| |||||| | | | || || || || || || || |||||||| |||||| Sbjct 4820738 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 4820797 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || |||||| | || |||||||| || || || || || || ||||||||||| Sbjct 4820798 TAATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGA 4820857 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| ||||| || ||||||||||| || || | || || || | || | Sbjct 4820858 TCAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTT 4820917 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||| ||||| || || || || ||||| || || ||||| || || || |||||| Sbjct 4820918 GGTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATT 4820974 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||||| |||||| | | | || || || || || || || |||||||| |||||| Sbjct 17036785 TTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTA 17036726 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || |||||| | || |||||||| || || || || || || ||||||||||| Sbjct 17036725 TAATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGA 17036666 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| ||||| || ||||||||||| || || | || || || | || | Sbjct 17036665 TCAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTT 17036606 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||| ||||| || || || || ||||| || || ||||| || || || |||||| Sbjct 17036605 GGTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATT 17036549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622388479720