Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 >seq1 Length=19924566 Score = 113 bits (124), Expect = 3e-20 Identities = 190/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||| | || || ||||| || || | ||| ||| | Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | | ||||| || || || ||||| || | || | | ||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 3528425 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || |||||||| ||||| || |||||| ||||||| ||||||| | | ||||| || Sbjct 3528424 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAAC 3528365 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || ||||| || |||||| | || ||| | ||| |||||||||||||| ||||| Sbjct 3528364 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAA-AATAA 3528306 Query 22074 AAACCATAAATATACATTAAATT-TTTTATTT 22104 || ||| ||||||||| | |||||| Sbjct 3528305 ----TTGAACTATTCATTAAATTATCTTATTT 3528278 Score = 107 bits (118), Expect = 1e-18 Identities = 123/164 (75%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| |||||||| ||||| || |||||| ||||||| ||| ||| | | ||||| Sbjct 18441502 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTAT 18441561 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAA 22070 || ||||| || ||||| || |||||| | || ||| | ||| |||||||||||||| || Sbjct 18441562 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAA-AA 18441620 Query 22071 TAAAAACCATAAATATACATTAAATTTTTTATTTAATTCGACAT 22114 ||| | |||||| | || |||||| || |||| |||| Sbjct 18441621 TAATTA----AAATATTCTTTTTATTTTTGTTTGAATTAAACAT 18441660 Score = 105 bits (116), Expect = 5e-18 Identities = 168/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||| | || || ||||| || || | ||| ||| | Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | | ||||| || || || ||||| || | || | | ||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12568290 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || |||||||| ||||| || |||||| ||||||| ||| ||| | | ||||| || Sbjct 12568291 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12568350 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || ||||| || |||||| | || ||| | ||| |||||||||||||| ||||| Sbjct 12568351 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAA-AATAA 12568409 Score = 105 bits (116), Expect = 5e-18 Identities = 168/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||| | || || ||||| || || | ||| ||| | Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | | ||||| || || || ||||| || | || | | ||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12575176 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || |||||||| ||||| || |||||| ||||||| ||| ||| | | ||||| || Sbjct 12575177 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12575236 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || ||||| || |||||| | || ||| | ||| |||||||||||||| ||||| Sbjct 12575237 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAA-AATAA 12575295 Score = 105 bits (116), Expect = 5e-18 Identities = 168/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||| | || || ||||| || || | ||| ||| | Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | | ||||| || || || ||||| || | || | | ||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 16561267 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || |||||||| ||||| || |||||| ||||||| ||| ||| | | ||||| || Sbjct 16561266 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 16561207 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || ||||| || |||||| | || ||| | ||| |||||||||||||| ||||| Sbjct 16561206 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAA-AATAA 16561148 Score = 102 bits (112), Expect = 6e-17 Identities = 171/245 (70%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 21826 AGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGG 21885 |||| ||||||||||| ||| |||| ||| | || || || || ||||| | ||| | Sbjct 4820980 AGTG-AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTG 4820922 Query 21886 AAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---AC 21942 || | || | | | | | |||| || ||| || ||||| || | || Sbjct 4820921 AACCAAATGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCAC 4820862 Query 21943 CTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGG 22002 ||| | ||||| |||||||| ||||| ||||||||| ||||||| ||| || | Sbjct 4820861 CTG---ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTT 4820805 Query 22003 CCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGAT 22062 | ||||| || ||||| || ||||| || |||||| | || ||| | ||| ||||||||| Sbjct 4820804 CAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGAT 4820745 Query 22063 ATTAA 22067 ||||| Sbjct 4820744 ATTAA 4820740 Score = 102 bits (112), Expect = 6e-17 Identities = 171/245 (70%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 21826 AGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGG 21885 |||| ||||||||||| ||| |||| ||| | || || || || ||||| | ||| | Sbjct 17036543 AGTG-AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTG 17036601 Query 21886 AAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---AC 21942 || | || | | | | | |||| || ||| || ||||| || | || Sbjct 17036602 AACCAAATGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCAC 17036661 Query 21943 CTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGG 22002 ||| | ||||| |||||||| ||||| ||||||||| ||||||| ||| || | Sbjct 17036662 CTG---ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTT 17036718 Query 22003 CCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGAT 22062 | ||||| || ||||| || ||||| || |||||| | || ||| | ||| ||||||||| Sbjct 17036719 CAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGAT 17036778 Query 22063 ATTAA 22067 ||||| Sbjct 17036779 ATTAA 17036783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124795635354