Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=19924566 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 114152 AATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || || | || ||| || |||||||| | || ||||||||||||||||| |||| Sbjct 18441616 AATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAAT 18441557 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | ||| ||||| | |||||| || || | || || | ||||| || | Sbjct 18441556 CTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTG 18441497 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT--TAGCTGTTCAACGGTGTCGGTGGA 114328 | ||||| |||||||| || |||||| ||| |||| |||| | ||| | | Sbjct 18441496 GTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC--ATCAATAGAGTCATTTGG 18441439 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| || | || | || || || || |||||||| ||||| || ||||| Sbjct 18441438 TTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134394879612