Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 >seq1 Length=19924566 Score = 118 bits (130), Expect = 3e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||||||||| || Sbjct 3528353 TTCTTTTTGAATGTTATAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAA 3528412 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| ||| ||||||||||| || ||||| || || || | Sbjct 3528413 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 3528472 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||||||| | | ||| ||||| | ||||| || || || || || ||||| || Sbjct 3528473 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 3528532 Query 288462 GAATATCTGCA---TTATGTTATTCT 288484 ||||| |||| || ||||||||| Sbjct 3528533 AAATATTTGCATCGTTCTGTTATTCT 3528558 Score = 118 bits (130), Expect = 3e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||||||||| || Sbjct 12568362 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 12568303 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| ||| ||||||||||| || ||||| || || || | Sbjct 12568302 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 12568243 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||||||| | | ||| ||||| | ||||| || || || || || ||||| || Sbjct 12568242 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 12568183 Query 288462 GAATATCTGCA---TTATGTTATTCT 288484 ||||| |||| || ||||||||| Sbjct 12568182 AAATATTTGCATCGTTCTGTTATTCT 12568157 Score = 118 bits (130), Expect = 3e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||||||||| || Sbjct 12575248 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 12575189 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| ||| ||||||||||| || ||||| || || || | Sbjct 12575188 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 12575129 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||||||| | | ||| ||||| | ||||| || || || || || ||||| || Sbjct 12575128 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 12575069 Query 288462 GAATATCTGCA---TTATGTTATTCT 288484 ||||| |||| || ||||||||| Sbjct 12575068 AAATATTTGCATCGTTCTGTTATTCT 12575043 Score = 118 bits (130), Expect = 3e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||||||||| || Sbjct 16561195 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 16561254 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| ||| ||||||||||| || ||||| || || || | Sbjct 16561255 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGC 16561314 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||||||| | | ||| ||||| | ||||| || || || || || ||||| || Sbjct 16561315 ATCAATAGAATCATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAAC 16561374 Query 288462 GAATATCTGCA---TTATGTTATTCT 288484 ||||| |||| || ||||||||| Sbjct 16561375 AAATATTTGCATCGTTCTGTTATTCT 16561400 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||| ||||| || Sbjct 4820782 TTCTTTTTGAATGTTATAATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAA 4820841 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| | ||| ||||||||||| || || || || ||||| | Sbjct 4820842 AATAAGTCTTTGTTGATCAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC 4820901 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||||||| | | ||| ||||| | || || ||||| || || || ||||| || Sbjct 4820902 ATCAATAGAATCATTTGGTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAAC 4820961 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 4820962 AAAGATTTGCATT 4820974 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||| ||||| || Sbjct 17036741 TTCTTTTTGAATGTTATAATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAA 17036682 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| | ||| ||||||||||| || || || || ||||| | Sbjct 17036681 AATAAGTCTTTGTTGATCAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC 17036622 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||||||| | | ||| ||||| | || || ||||| || || || ||||| || Sbjct 17036621 ATCAATAGAATCATTTGGTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAAC 17036562 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 17036561 AAAGATTTGCATT 17036549 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || ||| |||||||||||||||||||| || Sbjct 18441576 TTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAA 18441517 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| ||| ||||||||||| || || || || ||||| | Sbjct 18441516 AATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGC 18441457 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || ||||| || | | ||| ||||| | ||||| ||||| || || ||||| || || Sbjct 18441456 ATCAATAGAGTCATTTGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAAC 18441397 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 18441396 AAAGATTTGCATT 18441384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654384885678