Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 >seq1 Length=19924566 Score = 105 bits (116), Expect = 7e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 4820756 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGTGTCTTT 4820815 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || ||||| ||| |||| || | || || || || |||||||||||| Sbjct 4820816 CCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCCTTCT 4820875 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 |||||||| | | || ||||| | | | || | | |||| | || ||||||| || Sbjct 4820876 TTTTCTTG-AATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTAATGT 4820934 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||||| || || | || || || || ||||||||||| Sbjct 4820935 AATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 105 bits (116), Expect = 7e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 17036767 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGTGTCTTT 17036708 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || ||||| ||| |||| || | || || || || |||||||||||| Sbjct 17036707 CCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCCTTCT 17036648 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 |||||||| | | || ||||| | | | || | | |||| | || ||||||| || Sbjct 17036647 TTTTCTTG-AATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTAATGT 17036589 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||||| || || | || || || || ||||||||||| Sbjct 17036588 AATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 104 bits (114), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 18441602 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTT 18441543 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| || | || || || || |||||||||||| Sbjct 18441542 CCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCT 18441483 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 |||||||| | | || ||||| | | | || | | ||| | || ||||||| || Sbjct 18441482 TTTTCTTG-AATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACTTCTAATGT 18441424 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 | ||||| || || | |||||| || || |||||||||| Sbjct 18441423 GATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTT 18441383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 3528327 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTTTTT 3528386 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| || | || || || || |||||||||||| Sbjct 3528387 CCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCT 3528446 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 |||||||| || || ||| | | | || | | |||| | || ||||||| || Sbjct 3528447 TTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTG 3528506 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || | || || || || |||||||| Sbjct 3528507 ATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 12568388 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTT 12568329 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| || | || || || || |||||||||||| Sbjct 12568328 CCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCT 12568269 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 |||||||| || || ||| | | | || | | |||| | || ||||||| || Sbjct 12568268 TTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTG 12568209 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || | || || || || |||||||| Sbjct 12568208 ATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 12575274 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTT 12575215 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| || | || || || || |||||||||||| Sbjct 12575214 CCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCT 12575155 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 |||||||| || || ||| | | | || | | |||| | || ||||||| || Sbjct 12575154 TTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTG 12575095 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || | || || || || |||||||| Sbjct 12575094 ATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||||| || ||||||||||||||||| ||||||| | || Sbjct 16561169 AATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTT 16561228 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| || | || || || || |||||||||||| Sbjct 16561229 CCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCT 16561288 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 |||||||| || || ||| | | | || | | |||| | || ||||||| || Sbjct 16561289 TTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACTTCTAATGTG 16561348 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || | || || || || |||||||| Sbjct 16561349 ATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644793754440