Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 >seq1 Length=19924566 Score = 116 bits (128), Expect = 3e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| || Sbjct 4820747 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC--TG 4820804 Query 15010 AGAAT-TCTCGCGT-CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||| | | |||||||||||||||| || | || | | ||||| || || Sbjct 4820805 AAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTG 4820864 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || ||| || ||| | | || |||| ||| | ||| | Sbjct 4820865 GAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAA 4820924 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | ||||| ||||| || || || || || || || ||||| |||||||| || Sbjct 4820925 CTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 116 bits (128), Expect = 3e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| || Sbjct 17036776 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC--TG 17036719 Query 15010 AGAAT-TCTCGCGT-CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||| | | |||||||||||||||| || | || | | ||||| || || Sbjct 17036718 AAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTG 17036659 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || ||| || ||| | | || |||| ||| | ||| | Sbjct 17036658 GAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAA 17036599 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | ||||| ||||| || || || || || || || ||||| |||||||| || Sbjct 17036598 CTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 18441611 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 18441552 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| || || | || | | ||||| || |||| Sbjct 18441551 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 18441492 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || ||| | | || |||| || | ||| || Sbjct 18441491 ATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACT 18441432 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || || || |||||||| ||||| |||||||| Sbjct 18441431 TCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 3528318 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 3528377 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| || | | |||||||||||||| || || | || | | ||||| || |||| Sbjct 3528378 AGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 3528437 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || || || || | | || |||| ||| | ||| || Sbjct 3528438 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 3528497 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 3528498 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 12568397 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 12568338 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| || || | || | | ||||| || |||| Sbjct 12568337 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 12568278 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || || || || | | || |||| ||| | ||| || Sbjct 12568277 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 12568218 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 12568217 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 12575283 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 12575224 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| || || | || | | ||||| || |||| Sbjct 12575223 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 12575164 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || || || || | | || |||| ||| | ||| || Sbjct 12575163 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 12575104 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 12575103 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 16561160 CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAA 16561219 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| || || | || | | ||||| || |||| Sbjct 16561220 AGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGA 16561279 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || || || || | | || |||| ||| | ||| || Sbjct 16561280 ATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTCGACT 16561339 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 16561340 TCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391995644285