Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=19924566 Score = 113 bits (124), Expect = 4e-20 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45104 TTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||||||| | ||||| | | || || |||| ||| || |||||||| ||||| || Sbjct 18441623 TTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATG 18441564 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 |||||||| | || || || || |||||||||||||| | || | || ||| Sbjct 18441563 TTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGT 18441504 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || ||||| |||||||| |||||||| || ||| || || || | | ||| Sbjct 18441503 TGATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCA 18441444 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| | || | || || || || |||||||| ||||| |||||||| Sbjct 18441443 TTTGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Score = 104 bits (114), Expect = 2e-17 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 45104 TTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||||||| | ||||| | | || || |||| ||| || |||||||| ||||| || Sbjct 3528306 TTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATG 3528365 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 |||||||| | ||||| || || |||||||||||||| | || | || ||| Sbjct 3528366 TTATAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGT 3528425 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || ||||| |||||||| ||||| || || || || || || | | || Sbjct 3528426 TGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCA 3528485 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 3528486 TTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATC 3528545 Query 45342 G 45342 | Sbjct 3528546 G 3528546 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 45104 TTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||||||| | ||||| | | || || |||| ||| || |||||||| ||||| || Sbjct 12568409 TTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATG 12568350 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 |||||||| | || || || || |||||||||||||| | || | || ||| Sbjct 12568349 TTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGT 12568290 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || ||||| |||||||| ||||| || || || || || || | | || Sbjct 12568289 TGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCA 12568230 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 12568229 TTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATC 12568170 Query 45342 G 45342 | Sbjct 12568169 G 12568169 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 45104 TTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||||||| | ||||| | | || || |||| ||| || |||||||| ||||| || Sbjct 12575295 TTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATG 12575236 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 |||||||| | || || || || |||||||||||||| | || | || ||| Sbjct 12575235 TTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGT 12575176 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || ||||| |||||||| ||||| || || || || || || | | || Sbjct 12575175 TGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCA 12575116 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 12575115 TTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATC 12575056 Query 45342 G 45342 | Sbjct 12575055 G 12575055 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 45104 TTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||||||| | ||||| | | || || |||| ||| || |||||||| ||||| || Sbjct 16561148 TTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATG 16561207 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 |||||||| | || || || || |||||||||||||| | || | || ||| Sbjct 16561208 TTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGT 16561267 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || ||||| |||||||| ||||| || || || || || || | | || Sbjct 16561268 TGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCA 16561327 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 16561328 TTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATC 16561387 Query 45342 G 45342 | Sbjct 16561388 G 16561388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003194349960