Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 >seq1 Length=19924566 Score = 123 bits (136), Expect = 6e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 18441606 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGT 18441547 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || || ||||| || ||||||| |||||| ||||| ||||| || Sbjct 18441546 CTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCC 18441487 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTC-TCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||| ||||||| | || |||| | | ||||| | ||| ||| ||||| | Sbjct 18441486 TTCTTTTTCTTGAA-TCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTCGACTTCTA 18441428 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | |||||||| || | |||||| || || | |||||||| Sbjct 18441427 ATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCATTT 18441383 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 3528323 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGT 3528382 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | | || ||||| | || || ||||| || ||||||| |||||| ||||| ||||| || Sbjct 3528383 TTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCC 3528442 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || Sbjct 3528443 TTCTTTTTCTTGGATCTT 3528460 Score = 105 bits (116), Expect = 1e-17 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | ||| || Sbjct 4820752 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGTGT 4820811 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || || ||||| || ||||||| |||||| || || ||||| || Sbjct 4820812 CTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCC 4820871 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTC-TCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||| ||||||| | || |||| | | ||||| | || ||| ||||| | Sbjct 4820872 TTCTTTTTCTTGAA-TCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTA 4820930 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| |||||||| || | || || || || | |||||||| Sbjct 4820931 ATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTT 4820975 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 12568392 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGT 12568333 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || || ||||| || ||||||| |||||| ||||| ||||| || Sbjct 12568332 CTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCC 12568273 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || Sbjct 12568272 TTCTTTTTCTTGGATCTT 12568255 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 12575278 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGT 12575219 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || || ||||| || ||||||| |||||| ||||| ||||| || Sbjct 12575218 CTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCC 12575159 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || Sbjct 12575158 TTCTTTTTCTTGGATCTT 12575141 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 16561165 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGT 16561224 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || || ||||| || ||||||| |||||| ||||| ||||| || Sbjct 16561225 CTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCC 16561284 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || Sbjct 16561285 TTCTTTTTCTTGGATCTT 16561302 Score = 105 bits (116), Expect = 1e-17 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || || ||||||||||| || ||||| | ||| || Sbjct 17036771 TCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATCTGAAAGTGT 17036712 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || || ||||| || ||||||| |||||| || || ||||| || Sbjct 17036711 CTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGGTGGAATTCC 17036652 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTC-TCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||| ||||||| | || |||| | | ||||| | || ||| ||||| | Sbjct 17036651 TTCTTTTTCTTGAA-TCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTCAACTTCTA 17036593 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| |||||||| || | || || || || | |||||||| Sbjct 17036592 ATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTT 17036548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481585784767