Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 >seq1 Length=19924566 Score = 154 bits (170), Expect = 2e-32 Identities = 376/553 (68%), Gaps = 24/553 (4%) Strand=Plus/Minus Query 77983 AAATAAATTTTAAATGAAAGATGGACGGGTATATAAAGTTAATTTTGGGTCCTATGTTTT 78042 |||| |||| ||| | | ||| | |||| ||| | |||||| | |||||||||||| Sbjct 4694867 AAATGAATTAGAAAAAACATATG-ATGGGTCTATTCAATTAATTATTGGTCCTATGTTTA 4694809 Query 78043 CTGGAAAAACAACAGAATTAGTTAGaatagttaaaagatataaa-atagcaaattataaa 78101 ||| ||||| || |||||| | ||| | ||||||| | || | || |||| | || Sbjct 4694808 GTGGTAAAACTACTGAATTAATAAGACTTATTAAAAGGTTTAGATATTCCAAA--AAAAC 4694751 Query 78102 tgctgt-gtaataaaatattataatgataataGATGTG-AT--GAAAGTATAGTAAAGAC 78157 | |||| || || ||||| | ||| |||| ||| | || || ||| | || | | Sbjct 4694750 TACTGTTGTTATTAAATACTCTAAGGATACTAGGTATGGATCGGAAGATGAAGCTATTTC 4694691 Query 78158 GCACGATGGAGTTTACATTGATT-CTATTTCAACATTAAAACTTAACGATATAATTTATG 78216 || ||| || | ||| || ||||| |||| | ||| |||| | | | || | Sbjct 4694690 TCATGATAAAGAAT-CATGGAAAGCTATTCCAACCATGAAA-TTAATGCCAGTACTT--G 4694635 Query 78217 AAATGGAT---AATGTTGATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAG 78273 ||| | | ||| ||| |||||||| |||||||||||||| || || || || Sbjct 4694634 AAACCGCTCTTAATTATGAAGTTATTGGTATTGATGAAGGTCAGTTCTTCCCAGACTTAA 4694575 Query 78274 TGGAATTTTCTGAAAATATG-GCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGAT 78332 | || ||||| || ||| |||| | | |||| | | || || | | ||||||||| Sbjct 4694574 TAGAGTTTTCAGAGGC-ATGTGCAAGTTATGGAAGATTGGTAATCATAGCAGCATTAGAT 4694516 Query 78333 GCTACATATCAAAGAAAAACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAAAG 78392 | ||||| ||||||||| ||||||| | ||| || | |||||||||| ||||| Sbjct 4694515 GGTACATTCCAAAGAAAACCATTTGGACAAATTACTGATCTTATTCCATTATGTGAAAGC 4694456 Query 78393 GTAATAAAATTAAATGCTATATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGA 78452 |||| ||| |||| |||| | ||| | ||| ||| | || || ||| || |||| Sbjct 4694455 GTAAAAAAGTTAAGTGCTGTTTGTGTTAATTGTGGTAAAAAAGCAGCTTTTTCATTAAGA 4694396 Query 78453 TTATGT---GACGATACTAAAATTGAACTAATTGGTGGAGAGGATAAATATAGTTCTGTT 78509 || || || | ||||||| | ||||| |||| ||||||||| || |||| Sbjct 4694395 ACCAGTTCAGAAGAATC---AATTGAAGTTATTGGAGGAGTAGATAAATATTGTGCTGTC 4694339 Query 78510 TGTAGAAAATGTT 78522 ||||||||||||| Sbjct 4694338 TGTAGAAAATGTT 4694326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316792596040