Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 138 9e-28 >seq1 Length=19924566 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 18441615 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 18441556 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | | || || ||||| || |||||||| || | | |||||||| || Sbjct 18441555 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 18441496 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| |||||||| || ||| | | || | || |||| | ||| Sbjct 18441495 TGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTC 18441436 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | |||| || || || || | |||||| ||||| || ||||| Sbjct 18441435 GACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385 Score = 131 bits (144), Expect = 1e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 3528314 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 3528373 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | |||| | | || || ||||| || |||||||| || | | |||||||| || Sbjct 3528374 TGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 3528433 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| ||||| || || || | | || | || ||| | ||| Sbjct 3528434 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 3528493 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| | |||| ||||| || || | || || |||||||| ||||| ||| Sbjct 3528494 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 3528548 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 12568401 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 12568342 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | | || || ||||| || |||||||| || | | |||||||| || Sbjct 12568341 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 12568282 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| ||||| || || || | | || | || ||| | ||| Sbjct 12568281 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 12568222 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| | |||| ||||| || || | || || |||||||| ||||| ||| Sbjct 12568221 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 12568167 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 12575287 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 12575228 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | | || || ||||| || |||||||| || | | |||||||| || Sbjct 12575227 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 12575168 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| ||||| || || || | | || | || ||| | ||| Sbjct 12575167 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 12575108 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| | |||| ||||| || || | || || |||||||| ||||| ||| Sbjct 12575107 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 12575053 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 16561156 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 16561215 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | | || || ||||| || |||||||| || | | |||||||| || Sbjct 16561216 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 16561275 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| ||||| || || || | | || | || ||| | ||| Sbjct 16561276 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 16561335 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| | |||| ||||| || || | || || |||||||| ||||| ||| Sbjct 16561336 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 16561390 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 4820743 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 4820802 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | || | | || || ||||| || |||||||| || | | |||||||| || Sbjct 4820803 TGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGG 4820862 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| |||||||| || ||| | | || | || ||| | ||| Sbjct 4820863 TGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTC 4820922 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || | || || || || | || || ||||| || ||||| Sbjct 4820923 AACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 4820973 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||||||||| | ||| ||||||||||| || ||||||||||| || || ||||| Sbjct 17036780 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 17036721 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | || | | || || ||||| || |||||||| || | | |||||||| || Sbjct 17036720 TGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGG 17036661 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| |||||||| || ||| | | || | || ||| | ||| Sbjct 17036660 TGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTC 17036601 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || | || || || || | || || ||||| || ||||| Sbjct 17036600 AACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 17036550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278395170357