Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31]
1 sequences; 19,924,566 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 9e-28
>seq1
Length=19924566
Score = 138 bits (152), Expect = 9e-28
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 18441615 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 18441556
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | ||| | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 18441555 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 18441496
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| |||||||| || ||| | | || | || |||| | |||
Sbjct 18441495 TGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAGTCATTTGGTTC 18441436
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | |||| || || || || | |||||| ||||| || |||||
Sbjct 18441435 GACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGCAT 18441385
Score = 131 bits (144), Expect = 1e-25
Identities = 170/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 3528314 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 3528373
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | |||| | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 3528374 TGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 3528433
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| ||||| || || || | | || | || ||| | |||
Sbjct 3528434 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 3528493
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
||||| | |||| ||||| || || | || || |||||||| ||||| |||
Sbjct 3528494 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 3528548
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 12568401 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 12568342
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | ||| | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 12568341 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 12568282
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| ||||| || || || | | || | || ||| | |||
Sbjct 12568281 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 12568222
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
||||| | |||| ||||| || || | || || |||||||| ||||| |||
Sbjct 12568221 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 12568167
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 12575287 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 12575228
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | ||| | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 12575227 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 12575168
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| ||||| || || || | | || | || ||| | |||
Sbjct 12575167 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 12575108
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
||||| | |||| ||||| || || | || || |||||||| ||||| |||
Sbjct 12575107 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 12575053
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 16561156 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 16561215
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | ||| | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 16561216 TGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCTGG 16561275
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| ||||| || || || | | || | || ||| | |||
Sbjct 16561276 TGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGTTC 16561335
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
||||| | |||| ||||| || || | || || |||||||| ||||| |||
Sbjct 16561336 GACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCATCGTT 16561390
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 4820743 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 4820802
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | || | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 4820803 TGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGG 4820862
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| |||||||| || ||| | | || | || ||| | |||
Sbjct 4820863 TGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTC 4820922
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | || | || || || || | || || ||||| || |||||
Sbjct 4820923 AACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 4820973
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298
|| |||||||||||| | ||| ||||||||||| || ||||||||||| || || |||||
Sbjct 17036780 ATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAATC 17036721
Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358
| | || | | || || ||||| || |||||||| || | | |||||||| ||
Sbjct 17036720 TGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCAGG 17036661
Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418
||||| |||||||| |||||||| || ||| | | || | || ||| | |||
Sbjct 17036660 TGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGTTC 17036601
Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | || | || || || || | || || ||||| || |||||
Sbjct 17036600 AACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 17036550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278395170357
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |