Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1 100 7e-16 >seq1 Length=19924566 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Minus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 1801096 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 1801037 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 1801036 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 1800980 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 1800979 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 1800920 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 1800919 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 1800860 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 1800859 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 1800803 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 1800802 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 1800744 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 1800743 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 1800703 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Minus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 10497611 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 10497552 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 10497551 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 10497495 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 10497494 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 10497435 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 10497434 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 10497375 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 10497374 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 10497318 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 10497317 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 10497259 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 10497258 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 10497218 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Plus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 11523883 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 11523942 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 11523943 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 11523999 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 11524000 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 11524059 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 11524060 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 11524119 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 11524120 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 11524176 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 11524177 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 11524235 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 11524236 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 11524276 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Minus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 11614123 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 11614064 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 11614063 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 11614007 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 11614006 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 11613947 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 11613946 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 11613887 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 11613886 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 11613830 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 11613829 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 11613771 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 11613770 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 11613730 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Plus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 16541548 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 16541607 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 16541608 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 16541664 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 16541665 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 16541724 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 16541725 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 16541784 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 16541785 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 16541841 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 16541842 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 16541900 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 16541901 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 16541941 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Plus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 17148220 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 17148279 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 17148280 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 17148336 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 17148337 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 17148396 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 17148397 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 17148456 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 17148457 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 17148513 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 17148514 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 17148572 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 17148573 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 17148613 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Plus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 17266316 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 17266375 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 17266376 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 17266432 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 17266433 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 17266492 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 17266493 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 17266552 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 17266553 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 17266609 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 17266610 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 17266668 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 17266669 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 17266709 Score = 100 bits (110), Expect = 7e-16 Identities = 269/401 (67%), Gaps = 14/401 (3%) Strand=Plus/Minus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 ||| ||||| ||| | ||| | || || ||||| |||||||||||| | | ||||| Sbjct 17437629 AACGAAAAATAATCCAGTCTTAATAGGAGAGCCAGGAGTTGGTAAAACAGCAGTAGTTGA 17437570 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 ||| | |||||| | || | ||| || ||||||||| | | || | |||| | | | Sbjct 17437569 AGGACTTGCACAAAGAATTGTTAAAGGGGATGTTCCAAGTAATTTGCA--ATGTCG-AGT 17437513 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | || || ||||||| ||||| | || || | | ||| | || |||| ||||| Sbjct 17437512 TATTGGATTAGATATGGGAGCATTAATAGCAGGAGCACAATATAGAGGACAATTTGAAGA 17437453 Query 150559 ACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGA---TGATGTTATTCTGTTCAT 150615 | | || | | || ||||| | |||||| | | | |||| |||| || Sbjct 17437452 AAGATTAAAAGCAGTAATAAAAGAAGTTAAAGAAAGTAAAATACCTATTATATTGTTTAT 17437393 Query 150616 CGATGAAATCCATAC--TATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 |||||||| || || ||||| || ||||| || || || | || | ||||| Sbjct 17437392 AGATGAAATTCACACAGTATTA--GGAGCTGGAGCAACAGGAGAAGGAGCAATGGAT-GC 17437336 Query 150674 AGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAA 150731 ||| ||||| |||||||| |||| | || ||| | || ||| || || ||||||| Sbjct 17437335 AGCTAATATTTTAAAACCAATGTTATCAAGAGGAGAATTACGATGT-ATTGGAGCAACAA 17437277 Query 150732 CCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 | | || |||||| | ||| | ||||||||||| ||||| Sbjct 17437276 CGTTAGAGGAATATAGAAAATATGTTGAAAAAGATCCAGCA 17437236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147590385296498