Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=19924566 Score = 123 bits (136), Expect = 2e-23 Identities = 169/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||| | || || ||||| || || ||| ||||| Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | | ||| || ||| || ||||| ||| | || ||||||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 3528425 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || |||||||| ||||| |||||| | | ||||||||| Sbjct 3528424 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAAC 3528365 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAA 28788 |||||||||||||| || || || | || ||||||||| ||||| ||||| ||| Sbjct 3528364 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGA-GGATATTAA 3528311 Score = 118 bits (130), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||| | || || ||||| || || ||| ||||| Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | | ||| || ||| || ||||| ||| | || ||||||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12568290 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || |||||||| ||||| || ||| | | ||||||||| Sbjct 12568291 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12568350 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAA 28788 |||||||||||||| || || || | || ||||||||| ||||| ||||| ||| Sbjct 12568351 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGA-GGATATTAA 12568404 Score = 118 bits (130), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||| | || || ||||| || || ||| ||||| Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | | ||| || ||| || ||||| ||| | || ||||||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12575176 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || |||||||| ||||| || ||| | | ||||||||| Sbjct 12575177 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12575236 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAA 28788 |||||||||||||| || || || | || ||||||||| ||||| ||||| ||| Sbjct 12575237 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGA-GGATATTAA 12575290 Score = 118 bits (130), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||| | || || ||||| || || ||| ||||| Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | | ||| || ||| || ||||| ||| | || ||||||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 16561267 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||| ||||| || |||||||| ||||| || ||| | | ||||||||| Sbjct 16561266 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 16561207 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAA 28788 |||||||||||||| || || || | || ||||||||| ||||| ||||| ||| Sbjct 16561206 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGA-GGATATTAA 16561153 Score = 113 bits (124), Expect = 4e-20 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || ||||| ||| | || ||||||||| |||||||| ||||| || |||||||| ||| Sbjct 18441478 GAAAAAGAAGGAATTCCACCAGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAA 18441537 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || || ||| | | ||||||||||||||||||||||| || || || | || ||| Sbjct 18441538 GAAGGAAAGACTCTTTCAGATTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTA 18441597 Query 28767 AGATTACGAGGAGGGATAATAA 28788 |||||| ||||| ||||| ||| Sbjct 18441598 AGATTAAGAGGA-GGATATTAA 18441618 Score = 111 bits (122), Expect = 1e-19 Identities = 172/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 28548 GTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA 28607 || ||||||||||| ||||| || ||| | || || || || ||||| ||| ||| Sbjct 4820979 GTGAAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAA 4820920 Query 28608 CCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || | | | | | | || || || | || || ||||| ||| | || Sbjct 4820919 CCAAATGATTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACC 4820861 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 |||||||| |||||||| ||||| ||||||||||| ||||| || || | | || Sbjct 4820860 TGATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGA 4820801 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||||||||||||||||||| || || || | || ||||||||| ||||| ||||| | Sbjct 4820800 TTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGA-GGATATT 4820742 Query 28787 AA 28788 || Sbjct 4820741 AA 4820740 Score = 111 bits (122), Expect = 1e-19 Identities = 172/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 28548 GTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA 28607 || ||||||||||| ||||| || ||| | || || || || ||||| ||| ||| Sbjct 17036544 GTGAAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAA 17036603 Query 28608 CCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || | | | | | | || || || | || || ||||| ||| | || Sbjct 17036604 CCAAATGATTCTATTGATGCTATTAAAGCTAAGATTCAA-GAAAAAGAAGGAATTCCACC 17036662 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 |||||||| |||||||| ||||| ||||||||||| ||||| || || | | || Sbjct 17036663 TGATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGA 17036722 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||||||||||||||||||| || || || | || ||||||||| ||||| ||||| | Sbjct 17036723 TTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGA-GGATATT 17036781 Query 28787 AA 28788 || Sbjct 17036782 AA 17036783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404794815379