Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 7e-12 >seq1 Length=19924566 Score = 86.0 bits (94), Expect = 7e-12 Identities = 271/412 (66%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 159076 CCATGAATTGTACACTTTTTACCCTCTTTCAA-AAGTCTTATAAACTTTGGAATGAGTTT 159134 ||||||| || ||| ||||| || ||| |||| ||| | || ||||| ||||| | ||| Sbjct 2869616 CCATGAAGTGGACAATTTTTTCC-TCTGTCAAGAAGAGTAATGAACTTAGGAATTAATTT 2869558 Query 159135 CTCCGGGTATTGATTTGGACCATAAACATTATTACAGCG---AATTATTT-TGATATTCA 159190 ||| || |||| | ||| ||| | |||||||| | | ||| ||| || | || Sbjct 2869557 CTCTGGAAATTGGTGTGGTCCAAATACATTATTTCCTCTTGTAATGATTAGTGGAAGTC- 2869499 Query 159191 TATCAAATGATTCTATATATGAACGGACTATCATTTCGGCCGCCGCTTTTGATGCTGAAT 159250 ||||||||| | ||| ||| | || | ||| || | ||||||| |||||||| Sbjct 2869498 ---CAAATGATTGATAAAATGCACGAGCAATAAATTCAGCACCAGCTTTTGTTGCTGAAT 2869442 Query 159251 ATGGATTTGTTGGTCTAAGTACCCCTGTGTCTTCGGTGAAAGGTTCATCTGTTTTTGATT 159310 ||||||| ||||| | | || | || ||| || || ||| | | || Sbjct 2869441 ATGGATTAGTTGGGTTTAATA---AAGAGTTTTCAGTTGCAG---CATTTCCAATAACTT 2869388 Query 159311 CACCGTATACTTCATCTGTACTAAAATGTATAAATTCAACATTTGGTATG-TGACGCCTA 159369 ||| || ||||| || ||| | ||| |||||| | ||| |||| | | || Sbjct 2869387 GACCATAAACTTCGTCAGTAGAGACATGAATAAAT----CTTTTAATATGATTAGCTTTA 2869332 Query 159370 CAGACTTCAACGAGTGTATGTGTACCATATGTATTGTCTAAAGTAAACCCAAGAGGACTT 159429 | ||| | | |||||||||||| |||||| |||||| | | | || Sbjct 2869331 GCAATTTCTAATAAAACATGTGTACCATAAATATTGTTATGAGTAAATTGGAATGAATTT 2869272 Query 159430 GTAAATGAATTGTCTACATGACTTTGTGCGGCAAAGTGAAAAACATAATCAA 159481 ||||||||| |||||||| |||| || ||||| |||| |||| ||||| Sbjct 2869271 CCAAATGAATTATCTACATGGGTTTGAGCTGCAAAATGAAGAACAGTATCAA 2869220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569592542880