Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-27 >seq1 Length=19924566 Score = 138 bits (152), Expect = 2e-27 Identities = 267/387 (69%), Gaps = 18/387 (5%) Strand=Plus/Minus Query 193012 TTTAATATTTTCGtaatatatatcgttaagagaattcattttaattatatttataaaaat 193071 ||||||| ||| || ||||| | | | | | |||| ||| ||| | || || |||| Sbjct 18441744 TTTAATAATTT-GTTATATAAAACATATAAAAAATTTATTAAAATAAAATA-ATTGAAAT 18441687 Query 193072 tccatatttaattattaca-taattt-tggttaatt------aaaaaaaCCCGAGTAAGT 193123 ||||||||||| | | || ||| || |||||| |||| || || || | Sbjct 18441686 ATCATATTTAATTTTAATTGTAGTTTATGTTTAATTCAAACAAAAATAAAAAGAATATTT 18441627 Query 193124 AATTTAT----ATA-CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAA 193178 | |||| ||| || ||||| |||| | || | ||| | ||| | ||||| | Sbjct 18441626 TAATTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGA 18441567 Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || || | || | || |||||||||||||| |||||||| | ||| Sbjct 18441566 ATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTT 18441507 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || ||||||||||| ||||| || || | ||| ||| ||||| Sbjct 18441506 TGTTGATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAG 18441447 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || | || ||||||| || ||||| || || || || ||||| ||||| |||||| Sbjct 18441446 TCATTTGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAGTTTTAACAAAGATTTGC 18441387 Query 193359 ATTTTATTAGTAA---AATAATTATTT 193382 |||| |||||||| |||||||| || Sbjct 18441386 ATTTGATTAGTAACTTAATAATTAGTT 18441360 Score = 123 bits (136), Expect = 4e-23 Identities = 169/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 || |||| || ||||| |||| | || | ||| | ||| | ||||| ||| |||| Sbjct 3528311 TTAATAT-CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTAT 3528369 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | ||| | || |||||||||||||| |||||||| | ||| ||||||| Sbjct 3528370 AATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGAT 3528429 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || ||||||||||| ||||| || || | || ||| ||||| ||| | Sbjct 3528430 CTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTG 3528489 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || |||||||| || || || || || |||||||||||||| Sbjct 3528490 GTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 123 bits (136), Expect = 4e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 || |||| || ||||| |||| | || | ||| | ||| | ||||| ||| |||| Sbjct 4820740 TTAATAT-CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTAT 4820798 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | || ||||||||||| || |||||||| | ||| ||||||| Sbjct 4820799 AATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGAT 4820858 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 |||| || ||||||||||| ||||| || || | ||| ||| ||||| ||| | Sbjct 4820859 CAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTG 4820918 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||||| || ||||| || || || || || || ||||| ||||||||||| Sbjct 4820919 GTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 123 bits (136), Expect = 4e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 || |||| || ||||| |||| | || | ||| | ||| | ||||| ||| |||| Sbjct 17036783 TTAATAT-CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTAT 17036725 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | || ||||||||||| || |||||||| | ||| ||||||| Sbjct 17036724 AATCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGAT 17036665 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 |||| || ||||||||||| ||||| || || | ||| ||| ||||| ||| | Sbjct 17036664 CAGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTG 17036605 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||||| || ||||| || || || || || || ||||| ||||||||||| Sbjct 17036604 GTTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 118 bits (130), Expect = 2e-21 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 || |||| || ||||| |||| | || | ||| | ||| | ||||| ||| |||| Sbjct 12568404 TTAATAT-CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTAT 12568346 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | || |||||||||||||| |||||||| | ||| ||||||| Sbjct 12568345 AATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGAT 12568286 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || ||||||||||| ||||| || || | || ||| ||||| ||| | Sbjct 12568285 CTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTG 12568226 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || |||||||| || || || || || |||||||||||||| Sbjct 12568225 GTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 118 bits (130), Expect = 2e-21 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 || |||| || ||||| |||| | || | ||| | ||| | ||||| ||| |||| Sbjct 12575290 TTAATAT-CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTAT 12575232 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | || |||||||||||||| |||||||| | ||| ||||||| Sbjct 12575231 AATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGAT 12575172 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || ||||||||||| ||||| || || | || ||| ||||| ||| | Sbjct 12575171 CTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTG 12575112 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || |||||||| || || || || || |||||||||||||| Sbjct 12575111 GTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 118 bits (130), Expect = 2e-21 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 || |||| || ||||| |||| | || | ||| | ||| | ||||| ||| |||| Sbjct 16561153 TTAATAT-CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTAT 16561211 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | || | || |||||||||||||| |||||||| | ||| ||||||| Sbjct 16561212 AATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGAT 16561271 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || ||||||||||| ||||| || || | || ||| ||||| ||| | Sbjct 16561272 CTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTG 16561331 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || |||||||| || || || || || |||||||||||||| Sbjct 16561332 GTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654388754320