Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 152 8e-32 >seq1 Length=19924566 Score = 152 bits (168), Expect = 8e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| ||| | |||||||||||||| ||||||||||||||| | Sbjct 3528544 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 3528485 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| | || ||| || ||||| |||||||| || || ||||| ||| Sbjct 3528484 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 3528425 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| || || || | ||||| | |||| | ||||||||||| Sbjct 3528424 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAAACTCTTTCAGATTATAAC 3528365 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||||||||| |||||||||||||| || Sbjct 3528364 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 3528318 Score = 149 bits (164), Expect = 9e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| ||| | |||||||||||||| ||||||||||||||| | Sbjct 12568171 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12568230 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| | || ||| || ||||| |||||||| || || ||||| ||| Sbjct 12568231 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12568290 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| || || || | ||||| | ||| | ||||||||||| Sbjct 12568291 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12568350 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||||||||| |||||||||||||| || Sbjct 12568351 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 12568397 Score = 149 bits (164), Expect = 9e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| ||| | |||||||||||||| ||||||||||||||| | Sbjct 12575057 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 12575116 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| | || ||| || ||||| |||||||| || || ||||| ||| Sbjct 12575117 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 12575176 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| || || || | ||||| | ||| | ||||||||||| Sbjct 12575177 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 12575236 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||||||||| |||||||||||||| || Sbjct 12575237 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 12575283 Score = 149 bits (164), Expect = 9e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| ||| | |||||||||||||| ||||||||||||||| | Sbjct 16561386 ATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCAAAT 16561327 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| | || ||| || ||||| |||||||| || || ||||| ||| Sbjct 16561326 GATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGATCAA 16561267 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| || || || | ||||| | ||| | ||||||||||| Sbjct 16561266 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTATAAC 16561207 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||||||||| |||||||||||||| || Sbjct 16561206 ATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 16561160 Score = 147 bits (162), Expect = 3e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 155816 TAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA 155875 |||| |||||||||| ||| ||||||| | |||||||| ||||| |||||||||||||| Sbjct 18441378 TAATCAAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGA 18441437 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 | ||| |||| | ||| ||| || ||||| |||||||| || || || Sbjct 18441438 ACCAAATGACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACC 18441497 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGA 155995 ||| ||||||||| | |||| ||| || || || | ||||| | ||| | ||||| Sbjct 18441498 AGATCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGA 18441557 Query 155996 TTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||||| || ||||| | || ||||||||||| |||||||||||||| || Sbjct 18441558 TTATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 18441611 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| |||| ||| | |||||||| ||||||||||||||||| ||| Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||| |||| | ||| ||| || ||||| |||||||| || || || || Sbjct 4820916 AATGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGAT 4820857 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||| | |||| ||| || || || | ||||| | || | ||||||||| Sbjct 4820856 CAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTAT 4820797 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||||| | || ||||||||||| |||||||||||||| || Sbjct 4820796 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 4820747 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| |||| ||| | |||||||| ||||||||||||||||| ||| Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||| |||| | ||| ||| || ||||| |||||||| || || || || Sbjct 17036607 AATGATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGAT 17036666 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||| | |||| ||| || || || | ||||| | || | ||||||||| Sbjct 17036667 CAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATTAT 17036726 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||||| | || ||||||||||| |||||||||||||| || Sbjct 17036727 AACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 17036776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871990851600