Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 >seq1 Length=19924566 Score = 134 bits (148), Expect = 3e-26 Identities = 172/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 192305 TAATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||||| || ||||| | | ||| |||||||| | || | ||||| || |||||| Sbjct 4820741 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 4820800 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | ||| | | || || |||||||| || ||||| || | ||| ||||||||| Sbjct 4820801 TCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCA 4820860 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 ||||| ||||||||||| ||||| || ||| ||| | | | |||||||| | | Sbjct 4820861 GGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGT 4820920 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||||| ||||| || || ||||| | ||| |||| ||| || |||||||| Sbjct 4820921 TCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 134 bits (148), Expect = 3e-26 Identities = 172/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 192305 TAATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||||| || ||||| | | ||| |||||||| | || | ||||| || |||||| Sbjct 17036782 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 17036723 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | ||| | | || || |||||||| || ||||| || | ||| ||||||||| Sbjct 17036722 TCTGAAAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATCA 17036663 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 ||||| ||||||||||| ||||| || ||| ||| | | | |||||||| | | Sbjct 17036662 GGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGGT 17036603 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||||| ||||| || || ||||| | ||| |||| ||| || |||||||| Sbjct 17036602 TCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 125 bits (138), Expect = 1e-23 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGA 192355 ||| ||||||| || ||||| | | ||| |||||||| | || | ||||| | Sbjct 3528306 TTATTTTAATAT--CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAA 3528363 Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 | |||||||| || | ||| | | || || |||||||| || ||||| || | ||| | Sbjct 3528364 TGTTATAATCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTT 3528423 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT 192475 ||||||| ||||| ||||||||||| ||||| || ||| || | | | ||||||| Sbjct 3528424 GTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAAT 3528483 Query 192476 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | | ||| ||||||| || || ||||| ||||| | ||| |||| |||||| |||| Sbjct 3528484 CATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCA 3528543 Query 192536 T 192536 | Sbjct 3528544 T 3528544 Score = 125 bits (138), Expect = 1e-23 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 192280 ATATAGAGTATACTTT--TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTA 192337 ||| | || ||| ||| ||| ||||||| || ||||| | | ||| |||||||| | Sbjct 18441641 ATAAAAAGAATATTTTAATTATTTTAATAT--CCTCCTCTTAATCTTAAGACTAAATGAA 18441584 Query 192338 AAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTAC 192397 || | ||||| || |||||||| || | || | | || || |||||||| | Sbjct 18441583 GTGTTGATTCTTTTTGAATGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTC 18441524 Query 192398 CAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTT 192457 | ||||| || | ||| |||||||| ||||| ||||||||||| ||||| || ||| || Sbjct 18441523 CTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTT 18441464 Query 192458 TTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG 192517 | | | | ||||| || | ||| ||||||| || || || || ||||| | | Sbjct 18441463 TAATAGCATCAATAGAGTCATTTGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAG 18441404 Query 192518 TTTTAATAAATATCTGCATTTTATTAGAAA 192547 |||||| ||| || ||||||| ||||| || Sbjct 18441403 TTTTAACAAAGATTTGCATTTGATTAGTAA 18441374 Score = 122 bits (134), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGA 192355 ||| ||||||| || ||||| | | ||| |||||||| | || | ||||| | Sbjct 12568409 TTATTTTAATAT--CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAA 12568352 Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 | |||||||| || | || | | || || |||||||| || ||||| || | ||| | Sbjct 12568351 TGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTT 12568292 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT 192475 ||||||| ||||| ||||||||||| ||||| || ||| || | | | ||||||| Sbjct 12568291 GTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAAT 12568232 Query 192476 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | | ||| ||||||| || || ||||| ||||| | ||| |||| |||||| |||| Sbjct 12568231 CATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCA 12568172 Query 192536 T 192536 | Sbjct 12568171 T 12568171 Score = 122 bits (134), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGA 192355 ||| ||||||| || ||||| | | ||| |||||||| | || | ||||| | Sbjct 12575295 TTATTTTAATAT--CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAA 12575238 Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 | |||||||| || | || | | || || |||||||| || ||||| || | ||| | Sbjct 12575237 TGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTT 12575178 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT 192475 ||||||| ||||| ||||||||||| ||||| || ||| || | | | ||||||| Sbjct 12575177 GTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAAT 12575118 Query 192476 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | | ||| ||||||| || || ||||| ||||| | ||| |||| |||||| |||| Sbjct 12575117 CATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCA 12575058 Query 192536 T 192536 | Sbjct 12575057 T 12575057 Score = 122 bits (134), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGA 192355 ||| ||||||| || ||||| | | ||| |||||||| | || | ||||| | Sbjct 16561148 TTATTTTAATAT--CCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAA 16561205 Query 192356 TATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT 192415 | |||||||| || | || | | || || |||||||| || ||||| || | ||| | Sbjct 16561206 TGTTATAATCTGAAAGAGTCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTT 16561265 Query 192416 GTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT 192475 ||||||| ||||| ||||||||||| ||||| || ||| || | | | ||||||| Sbjct 16561266 GTTGATCTGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAAT 16561325 Query 192476 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | | ||| ||||||| || || ||||| ||||| | ||| |||| |||||| |||| Sbjct 16561326 CATTTGGTTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCA 16561385 Query 192536 T 192536 | Sbjct 16561386 T 16561386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479987386350