Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 132 9e-26 >seq1 Length=19924566 Score = 132 bits (146), Expect = 9e-26 Identities = 174/237 (73%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || ||| |||||||| | || | ||||| ||| |||||| Sbjct 4820741 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 4820800 Query 171897 TCTGATAAAGATCGTT-CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||||| || || || | || || |||||||| || |||||||| | ||| ||||| || Sbjct 4820801 TCTGA-AAGTGTCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATC 4820859 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 |||||| ||||||||||| ||||| || ||| ||| | | | |||| ||| | Sbjct 4820860 AGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGG 4820919 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| ||||||| ||||| || || ||||| | ||| |||| || || |||||||| Sbjct 4820920 TTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 4820976 Score = 132 bits (146), Expect = 9e-26 Identities = 174/237 (73%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || ||| |||||||| | || | ||||| ||| |||||| Sbjct 17036782 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 17036723 Query 171897 TCTGATAAAGATCGTTCGT-CATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||||| | | || ||| | | || |||||||| || |||||||| | ||| ||||| || Sbjct 17036722 TCTGAAAGTG-TCTTTCCTTCTTCTAATTGTTTGCCTGCAAAAATAAGTCTTTGTTGATC 17036664 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 |||||| ||||||||||| ||||| || ||| ||| | | | |||| ||| | Sbjct 17036663 AGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTTTAATAGCATCAATAGAATCATTTGG 17036604 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| ||||||| ||||| || || ||||| | ||| |||| || || |||||||| Sbjct 17036603 TTCAACTTCTAATGTAATAGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATTTT 17036547 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || ||| |||||||| | || | ||||| ||| |||||| Sbjct 3528312 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 3528371 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | || | | | || || |||||||| || |||||||| | ||| ||||| || Sbjct 3528372 TCTGAAAGAGTTTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATCT 3528431 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| ||||||||||| ||||| || ||| || | | | |||| ||| | | Sbjct 3528432 GGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGGT 3528491 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||| || || ||||| ||||| | ||| |||| ||||| ||||| Sbjct 3528492 TCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 3528544 Score = 127 bits (140), Expect = 4e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || ||| |||||||| | || | ||||| ||| |||||| Sbjct 12568403 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 12568344 Query 171897 TCTGATAAAGATCGTTCGT-CATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||||| | || || ||| | | || |||||||| || |||||||| | ||| ||||| || Sbjct 12568343 TCTGAAAGAG-TCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATC 12568285 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| ||||||||||| ||||| || ||| || | | | |||| ||| | Sbjct 12568284 TGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGG 12568225 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||||| || || ||||| ||||| | ||| |||| ||||| ||||| Sbjct 12568224 TTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12568171 Score = 127 bits (140), Expect = 4e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || ||| |||||||| | || | ||||| ||| |||||| Sbjct 12575289 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 12575230 Query 171897 TCTGATAAAGATCGTTCGT-CATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||||| | || || ||| | | || |||||||| || |||||||| | ||| ||||| || Sbjct 12575229 TCTGAAAGAG-TCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATC 12575171 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| ||||||||||| ||||| || ||| || | | | |||| ||| | Sbjct 12575170 TGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGG 12575111 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||||| || || ||||| ||||| | ||| |||| ||||| ||||| Sbjct 12575110 TTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 12575057 Score = 127 bits (140), Expect = 4e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || ||| |||||||| | || | ||||| ||| |||||| Sbjct 16561154 TAATATCCTCCTCTTAATCTTAAGACTAAATGAAGTGTTGATTCTTTTTGAATGTTATAA 16561213 Query 171897 TCTGATAAAGATCGTT-CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||||| | || || || | || || |||||||| || |||||||| | ||| ||||| || Sbjct 16561214 TCTGAAAGAG-TCTTTCCTTCTTCTAATTGTTTTCCTGCAAAAATAAGTCTTTGTTGATC 16561272 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| ||||||||||| ||||| || ||| || | | | |||| ||| | Sbjct 16561273 TGGTGGAATTCCTTCTTTTTCTTGGATCTTAGCCTTAATAGCATCAATAGAATCATTTGG 16561332 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||||| || || ||||| ||||| | ||| |||| ||||| ||||| Sbjct 16561333 TTCGACTTCTAATGTGATAGTTTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 16561386 Score = 127 bits (140), Expect = 4e-24 Identities = 191/266 (72%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 171813 ATATAGAGTATACTTTTTAGTTTCATAATA-CCACCTCTAAGTCGTAATACTAAATGTAA 171871 ||| | || ||| |||| | | | ||||| || ||||| | || ||| |||||||| | Sbjct 18441641 ATAAAAAGAATA-TTTTAATTATTTTAATATCCTCCTCTTAATCTTAAGACTAAATGAAG 18441583 Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGT-CATCCAATTGTTTAC 171930 || | ||||| ||| ||||||||||| | || || ||| | | || |||||||| | Sbjct 18441582 TGTTGATTCTTTTTGAATGTTATAATCTGAAAGAG-TCTTTCCTTCTTCTAATTGTTTTC 18441524 Query 171931 CAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTT 171990 | |||||||| | ||| ||||| || ||||| ||||||||||| ||||| || ||| || Sbjct 18441523 CTGCAAAAATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTTTCTTGAATCTTAGCTT 18441464 Query 171991 TTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG 172050 | | | | |||| || | ||| ||||||| || || || || ||||| | | Sbjct 18441463 TAATAGCATCAATAGAGTCATTTGGTTCGACTTCTAATGTGATAGTCTTTCCAGTAAGAG 18441404 Query 172051 TTTTAATGAATATCTGCATTTTATTA 172076 |||||| || || ||||||| |||| Sbjct 18441403 TTTTAACAAAGATTTGCATTTGATTA 18441378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135988685800