Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 >seq1 Length=19924566 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| |||| || || || || |||||||| || | ||||| ||| | Sbjct 3528547 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 3528488 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | || | | || ||||||||||| ||||||||||| || || ||| Sbjct 3528487 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 3528428 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTA 24879 |||||| | | || ||||| || ||||| | || || || |||| | |||||||| Sbjct 3528427 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAG-GAAAAACTCTTTCAGATTA 3528369 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 3528368 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 3528318 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || || || || || |||||||| | ||||| ||| | | Sbjct 4820973 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAAT 4820914 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | | ||| ||||| ||||| ||||||||||| || || |||||| Sbjct 4820913 GATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAA 4820854 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||| | | || ||||| || ||||| | || || || | ||| | ||||||||||| Sbjct 4820853 CAAAGACTTATTTTTGCAGGCAAACAATTAGAAGA-AGGAAAGACACTTTCAGATTATAA 4820795 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 4820794 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 4820747 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || || || || || |||||||| | ||||| ||| | | Sbjct 17036550 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCAAAT 17036609 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | | ||| ||||| ||||| ||||||||||| || || |||||| Sbjct 17036610 GATTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCTGATCAA 17036669 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||| | | || ||||| || ||||| | || || || | ||| | ||||||||||| Sbjct 17036670 CAAAGACTTATTTTTGCAGGCAAACAATTAGAAGA-AGGAAAGACACTTTCAGATTATAA 17036728 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 17036729 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 17036776 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || || || || ||||| || | ||||| ||| | | Sbjct 18441385 ATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAAAT 18441444 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | | ||| ||||| ||||| ||||||||||| || || |||||| Sbjct 18441445 GACTCTATTGATGCTATTAAAGCTAAGATTCAAGAAAAAGAAGGAATTCCACCAGATCAA 18441504 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATAA 24882 ||| | | || ||||| || ||||| | || || || | || | ||||||||||| Sbjct 18441505 CAAAGACTTATTTTTGCAGGAAAACAATTAGAAGA-AGGAAAGACTCTTTCAGATTATAA 18441563 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 18441564 CATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 18441611 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| |||| || || || || |||||||| || | ||||| ||| | Sbjct 12568168 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 12568227 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | || | | || ||||||||||| ||||||||||| || || ||| Sbjct 12568228 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 12568287 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTA 24879 |||||| | | || ||||| || ||||| | || || || | || | |||||||| Sbjct 12568288 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGA-AGGAAAGACTCTTTCAGATTA 12568346 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 12568347 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 12568397 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| |||| || || || || |||||||| || | ||||| ||| | Sbjct 12575054 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 12575113 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | || | | || ||||||||||| ||||||||||| || || ||| Sbjct 12575114 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 12575173 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTA 24879 |||||| | | || ||||| || ||||| | || || || | || | |||||||| Sbjct 12575174 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGA-AGGAAAGACTCTTTCAGATTA 12575232 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 12575233 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 12575283 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| |||| || || || || |||||||| || | ||||| ||| | Sbjct 16561389 ACGATGCAAATATTTGTTAAGACACTCACTGGAAAAACTATCACATTAGAAGTCGAACCA 16561330 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | || | | || ||||||||||| ||||||||||| || || ||| Sbjct 16561329 AATGATTCTATTGATGCTATTAAGGCTAAGATCCAAGAAAAAGAAGGAATTCCACCAGAT 16561270 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTA 24879 |||||| | | || ||||| || ||||| | || || || | || | |||||||| Sbjct 16561269 CAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGA-AGGAAAGACTCTTTCAGATTA 16561211 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| ||||| ||||| || || || || |||| | ||||| Sbjct 16561210 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGG 16561160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897594376280