Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 >seq1 Length=19924566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| || || | || || || || ||||| | ||| || || Sbjct 4820976 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 4820917 Query 110330 GACGATACTGTCG--GCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 | ||| || | | || | |||| | |||||| || |||||||| | || | Sbjct 4820916 AATGATTCTATTGATGCTAT-TAAAGCT-AAGATTCAAGAAAAAGAAGGAATTCCACCTG 4820859 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||||||||||||||||| ||| || ||||| | || || | | ||| | | |||| Sbjct 4820858 ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATT 4820799 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 | ||||||||||||||||| || | || | || |||||| | |||| ||| Sbjct 4820798 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 4820746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| || || | || || || || ||||| | ||| || || Sbjct 17036547 AAAATGCAAATCTTTGTTAAGACACTTACTGGAAAGACTATTACATTAGAAGTTGAACCA 17036606 Query 110330 GACGATACTGTCG--GCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 | ||| || | | || | |||| | |||||| || |||||||| | || | Sbjct 17036607 AATGATTCTATTGATGCTAT-TAAAGCT-AAGATTCAAGAAAAAGAAGGAATTCCACCTG 17036664 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||||||||||||||||| ||| || ||||| | || || | | ||| | | |||| Sbjct 17036665 ATCAACAAAGACTTATTTTTGCAGGCAAACAATTAGAAGAAGGAAAGACACTTTCAGATT 17036724 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 | ||||||||||||||||| || | || | || |||||| | |||| ||| Sbjct 17036725 ATAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGA 17036777 Score = 87.8 bits (96), Expect = 1e-12 Identities = 170/247 (69%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330 |||||||||| ||||| |||||| | || || || || || || | ||| || || Sbjct 18441383 AAATGCAAATCTTTGTTAAAACTCTTACTGGAAAGACTATCACATTAGAAGTCGAACCAA 18441442 Query 110331 ACGATACTGTCG--GCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | || || | | || | |||| | |||||| || |||||||| | || || Sbjct 18441443 ATGACTCTATTGATGCTAT-TAAAGCT-AAGATTCAAGAAAAAGAAGGAATTCCACCAGA 18441500 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||||||||||||||| ||| || ||||| | || || | | || | | ||||| Sbjct 18441501 TCAACAAAGACTTATTTTTGCAGGAAAACAATTAGAAGAAGGAAAGACTCTTTCAGATTA 18441560 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA---AAAAA 110505 ||||||||||||||||| || | || | || |||||| | |||| ||| |||| Sbjct 18441561 TAACATTCAAAAAGAATCAACACTTCATTTAGTCTTAAGATTAAGAGGAGGATATTAAAA 18441620 Query 110506 TAAATAA 110512 ||| ||| Sbjct 18441621 TAATTAA 18441627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841594968493